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Showing all 17 items for Latest entries: updated map

EMDB-0078:
Wide Pick Filament from Pick's disease brain
Method: helical / : Falcon B, Zhang W, Murzin AG, Murshudov G, Garringer HJ, Vidal R, Crowther RA, Ghetti B, Scheres SHW, Goedert M

EMDB-0136:
Electron cryo-microscopy of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs
Method: single particle / : Quentin D, Raunser S

EMDB-8925:
Cryo-EM structure of mouse TRPV3-Y564A
Method: single particle / : Singh AK, McGoldrick LL, Sobolevsky AI

EMDB-0015:
Symmetry-free cryo-EM map of GroEL-actin
Method: single particle / : Milicic G, Balchin D, Hayer-Hartl M, Hartl FU

EMDB-0016:
Symmetry-free cryo-EM map of TRiC in apo state (nucleotide free)
Method: single particle / : Milicic G, Balchin D, Hayer-Hartl M, Hartl FU

EMDB-0017:
Symmetry-free cryo-EM map of TRiC-actin
Method: single particle / : Milicic G, Balchin D, Hayer-Hartl M, Hartl FU

EMDB-0018:
Symmetry-free cryo-EM map of TRiC-actin-alpha_CCT1
Method: single particle / : Milicic G, Balchin D, Hayer-Hartl M, Hartl FU

EMDB-0022:
Symmetry-free cryo-EM map of TRiC-ADP-BeFx
Method: single particle / : Strauss M, Milicic G, Balchin D, Hayer-Hartl M, Hartl FU

EMDB-4387:
Aged P22 Empty Procapsid
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-4388:
P22 Empty Wiffleball
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-4389:
P22 CellB loaded Wiffleball
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-6991:
Structure of the human PKD1/PKD2 complex
Method: single particle / : Su Q, Hu F, Ge X, Lei J, Yu S, Wang T, Zhou Q, Mei C, Shi Y

EMDB-6992:
Structure of the human PKD1/PKD2 complex
Method: single particle / : Su Q, Hu F, Ge X, Lei J, Yu S, Wang T, Zhou Q, Mei C, Shi Y

EMDB-9012:
Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
Method: icosahedral / : Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Baker TS, Agbandje-McKenna M, Lyumkis D

EMDB-9522:
Human monomeric ATM kinase
Method: single particle / : Lau WC, Huen MS

EMDB-8899:
Negative stain reconstruction of human autophagy associated protein complex, ATG2A-WIPI4
Method: single particle / : Chowdhury S, Otomo C, Leitner A, Ohashi K, Aebersold R, Lander GC, Otomo T

EMDB-8900:
Negative stain reconstruction of human autophagy associated protein, ATG2A
Method: single particle / : Chowdhury S, Otomo C, Leitner A, Ohashi K, Aebersold R, Lander GC, Otomo T

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi

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