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Showing 1 - 50 of 195 items for Latest entries: updated map

EMDB-7828:
Cryo-EM structure of the mitochondrial calcium uniporter from N. fischeri bound to saposin
Method: single particle / : Nguyen NX, Armache JP, Cheng Y, Bai XC

EMDB-7477:
Cdc48 in the presence of ADP
Method: single particle / : Kim KH, Bodnar NO

EMDB-7478:
Cdc48 in the presence of ATP-gamma-S
Method: single particle / : Kim KH, Bodnar NO

EMDB-7479:
Cdc48-Npl4 complex in the presence of ADP
Method: single particle / : Kim KH, Bodnar NO

EMDB-7976:
Preformed GMPCPP microtubule washed with EB3, class 1
Method: helical / : Zhang R, Nogales E

EMDB-7977:
Preformed GMPCPP microtubule washed with EB3, class 2
Method: helical / : Zhang R, Nogales E

EMDB-4361:
Cryo-EM density of heteromeric mLRRC8A/C volume-regulated anion channel at 7.94 A resolution
Method: single particle / : Sawicka M, Deneka D, Lam AKM, Paulino C, Dutzler R

EMDB-6856:
Cryo-EM structure of human TRPC6 at 3.8A resolution
Method: single particle / : Chen L, Tang Q, Guo W

EMDB-8835:
Sub-tomogram average of ODA Post class
Method: subtomogram averaging / : Lin J, Nicastro D

EMDB-8836:
Sub-tomogram average of ODA Pre class
Method: subtomogram averaging / : Lin J, Nicastro D

EMDB-8837:
Sub-tomogram average of I1 dynein Post class
Method: subtomogram averaging / : Lin J, Nicastro D

EMDB-8838:
Sub-tomogram average of I1 dynein Pre class
Method: subtomogram averaging / : Lin J, Nicastro D

EMDB-7321:
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Method: subtomogram averaging / : Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

EMDB-8420:
Cryo-EM structure of BG505 DS-SOSIP HIV-1 Env trimer in complex with vaccine elicited, fusion peptide-directed antibody vFP1.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-8575:
Negative stain 3D reconstruction of hexameric ComM in the presence of ATP and ssDNA
Method: single particle / : Nero TM, Dalia TN, Wang JC-Y, Bochman ML, Dalia AB

EMDB-8888:
Unsharpened Map of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8889:
Focused classification map for high position subunit F of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8890:
Focused classification map for low position subunit F of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8891:
Focused classification map for VSL dimer bridging Subunit A and B of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8892:
Focused classification map for VSL dimer bridging Subunit B and C of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8893:
Focused classification map for VSL dimer bridging Subunit C and D of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8894:
Focused classification map for VSL dimer bridging Subunit D and E of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8895:
Focused classification map for VSL dimer bridging Subunit E and F of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-8896:
Focused classification map for VSL dimer bridging Subunit F and A of Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p
Method: single particle / : Han H, Monroe N

EMDB-7003:
Eilat virus/Venezuelan equine encephalitis virus chimeric vaccine candidate
Method: icosahedral / : Kaelber JT, Erasmus JH, Weaver SC, Nasar F, Chiu W

EMDB-7004:
Eilat virus/eastern equine encephalitis virus chimeric vaccine candidate
Method: icosahedral / : Sherman MB, Erasmus JH, Frolov I, Weaver SC, Nasar F

EMDB-7060:
Focused map on the aCTD-CAP region of the class-I bacterial transcription activation complex
Method: single particle / : Liu B, Hong C, Huang R, Yu Z, Steitz TA

EMDB-8484:
Bacteriophage G
Method: single particle / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8485:
Bacteriophage 121Q
Method: single particle / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8486:
Bacillus phage PBS1
Method: icosahedral / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8487:
Bacteriophage N3
Method: icosahedral / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8488:
Bacteriophage PAU
Method: single particle / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8489:
Bacteriophage Bellamy
Method: single particle / : Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF

EMDB-8760:
Capsid of Pseudorabies virus imaged in intact virions
Method: icosahedral / : Liu YT, Jiang J, Bohannon KP, Dai X, Luxton GW, Hui WH, Bi GQ, Smith GA, Zhou ZH

EMDB-8710:
A2 with sequestered coat dimer protein and interacting RNAs
Method: single particle / : Cui Z, Zhang J

EMDB-7029:
CryoEM map from poorly ordered myosin thick filaments isolated from asynchronous flight muscle of the large waterbug Lethocerus indicus
Method: single particle / : Taylor KA, Taylor D, Hu Z, Edwards RJ

EMDB-8839:
The Hsp90 Co-chaperon R2TP Forms a Hexameric Platform
Method: single particle / : Tian S, Yu G, He H, Liu P, Marshall A, Demeler B, Stagg S, Li H

EMDB-8638:
Cryo-EM map of the ERAD components Hrd1/Hrd3 dimer
Method: single particle / : Schoebel S, Mi W, Stein A, Rapoport TA, Liao M

EMDB-8639:
CryoEM map of Hrd1 dimer with one Hrd3 molecule
Method: single particle / : Schoebel S, Mi W, Stein A, Rapoport TA, Liao M

EMDB-8792:
MERS S ectodomain trimer in complex with Fab of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

EMDB-8793:
MERS S ectodomain trimer in complex with Fab of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

EMDB-8797:
SpoIIIAG 83-229
Method: single particle / : Zeytuni N, Hong C, Worrall LJ, Huang RK, Yu Z, Strynadka NCJ

EMDB-8798:
SpoIIIAG 55-229
Method: single particle / : Zeytuni N, Hong C, Worrall LJ, Huang RK, Yu Z, Strynadka NCJ

EMDB-8800:
SpoIIIAG
Method: single particle / : Zeytuni N, Hong C, Worrall LJ, Huang RK, Yu Z, Strynadka NCJ

EMDB-8727:
The cryo-ET structure of frozen-hydrated honey bee Z-disk
Method: subtomogram averaging / : Taylor KA

EMDB-8748:
Cryo-EM reconstruction of the Cafeteria roenbergensis virus capsid suggests a novel assembly pathway for giant viruses
Method: icosahedral / : Xiao C, Fischer MG, Bolotaulo DM, Ulloa-Rondeau N, Avila GA, Suttle CA

EMDB-8772:
Core Factor local refinement from Pol I Initial Transcribing Complex at 4.2 angstrom
Method: single particle / : Han Y, He Y

EMDB-8773:
Pol I local refinement from Pol I Initial Transcribing Complex at 3.7 angstrom
Method: single particle / : Han Y, He Y

EMDB-8777:
Pol I Initial Transcribing Complex with a truncated scaffold at 6.9 angstrom
Method: single particle / : Han Y, He Y

EMDB-9530:
Cryo-EM structure of the model post-termination complex (PoTC) in the rotated state
Method: single particle / : Iwakura N, Yokoyama T, Quaglia F, Mitsuoka K, Mio K, Shigematsu H, Shirouzu M, Kaji A, Kaji H

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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