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Showing all 20 items for Latest entries: updated map

EMDB-3904:
CryoEM density map of the pseudosymmetric PLC editing modules
Method: single particle / : Januliene D, Blees A, Trowitzsch S, Tampe R, Moeller A

EMDB-3905:
Cryo-EM density map of the human MHC-I peptide loading complex
Method: single particle / : Januliene D, Blees A, Trowitzsch S, Tampe R, Moeller A

EMDB-3806:
Chloroplast Ribosome, collected with pixel size 1.06
Method: single particle / : Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A

EMDB-3807:
Chloroplast Ribosome, collected with pixel size 1.39
Method: single particle / : Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A

EMDB-3808:
Chloroplast Ribosome, calculated from 20k rescaled particles
Method: single particle / : Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A

EMDB-8760:
Capsid of Pseudorabies virus imaged in intact virions
Method: icosahedral / : Liu YT, Jiang J, Bohannon KP, Dai X, Luxton GW, Hui WH, Bi GQ, Smith GA, Zhou ZH

EMDB-9400:
Cryo-EM structure of Mcm2-7 double hexamer on dsDNA
Method: single particle / : Li H, Yuan Z

EMDB-3781:
TET12SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3788:
PYR16SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3789:
TRIP18SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3814:
TORC1 Organised in Inhibited Domains (TOROIDs) regulate TORC1 activity
Method: helical / : Prouteau M, Desfosses A, Sieben C, Bourgoint C, Mozaffri NL, Demurtas D, Mitra AK, Guichard P, Manley S, Loewith R

EMDB-8859:
The complete structure of the small subunit processome
Method: single particle / : Barandun J, Chaker-Margot M

EMDB-3853:
Cryo-EM structure of human apoferritin H
Method: single particle / : Dudkina NV, Welsch S

EMDB-3588:
Cryo-EM map of the tetanus neurotoxin
Method: single particle / : Conrad J, Masuyer G, Stenmark P

EMDB-4108:
Cryo-EM of bovine respirasome
Method: single particle / : Sousa JS, Mills DJ, Vonck J, Kuehlbrandt W

EMDB-4109:
Cryo-EM of bovine respiratory supercomplex
Method: single particle / : Sousa JS, Mills DJ, Vonck J, Kuehlbrandt W

EMDB-8279:
Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
Method: single particle / : Loveland AB, Bah E

EMDB-8280:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
Method: single particle / : Loveland AB, Bah E

EMDB-8281:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
Method: single particle / : Loveland AB, Bah E

EMDB-8282:
Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
Method: single particle / : Loveland AB, Bah E

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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