[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 159 items for (author: zhu & yl)

EMDB-65060:
Molecular mechanism of prostaglandin transporter SLCO2A1
Method: single particle / : Li YH, Zhou ZX, Zhu ZN, Chao YL, Qu QH

EMDB-65055:
Cryo EM structure of hemagglutinin from Puerto Rico/8/1934 (H1N1) in complex with a single domain antibody
Method: single particle / : Yang ZL, Ying TL, Wu YL, Huang KK

EMDB-65056:
Cryo EM structure of hemagglutinin from Puerto Rico/8/1934-New York/55/2004 (H3N2) in complex with a single domain antibody
Method: single particle / : Yang ZL, Ying TL, Wu YL, Huang KK

EMDB-75011:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

PDB-9zzo:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

EMDB-72508:
BS3-crosslinked Smoothened/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74330:
SMO/PKA-C complex, mixed prior to grid preparation
Method: single particle / : Liu G, Myers BR

EMDB-74331:
SMO/PKA-C complex in MSP1E3D1 nanodiscs
Method: single particle / : Liu G, Myers BR

EMDB-74332:
Disulfide-trapped SMO-L637C/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74333:
EDC/Sulfo-NHS-crosslinked SMO/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74334:
SMO/PKA-C complex, dual EDC/Sulfo-NHS and BS3 crosslinking
Method: single particle / : Liu G, Myers BR

EMDB-70143:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

PDB-9o5k:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

EMDB-65449:
Cyanopodophage Pan3 capsid
Method: single particle / : Hou P, Zhou CZ, Jiang YL

EMDB-65451:
Cyanopodophage Pan3 portal complex
Method: single particle / : Hou P, Zhou CZ, Jiang YL

EMDB-65452:
Cyanopodophage Pan3 tail complex
Method: single particle / : Hou P, Zhou CZ, Jiang YL

EMDB-65453:
Cyanopodophage Pan3 tailspike
Method: single particle / : Hou P, Zhou CZ, Jiang YL

EMDB-62623:
Local map(dC-RTC) of pre-CI RTC
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62625:
nsp13-1 bound with RNA(local map of pre CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62638:
nsp13-2 bound with RNA(local map of pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62639:
nsp13-1 apo(local map of Pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-65093:
Zea mays URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-66597:
Arabidopsis thaliana URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-60808:
CryoEM structure of hSLC15A4+Fab107
Method: single particle / : Zhu YL, Zhang QX, Gao P

EMDB-60809:
CyroEM structure of hSLC15A4+TASL+Fab235
Method: single particle / : Zhu YL, Zhang QX, Gao P

EMDB-51726:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51730:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51733:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51734:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51735:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51736:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51737:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gz6:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzp:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzs:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzt:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzw:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzx:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzy:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-43242:
Transmembrane AMPA Receptor Regulatory Protein Subunit Gamma 2
Method: single particle / : Hale WD, Montano Romero A, Huganir RL, Twomey EC

PDB-8vhv:
Transmembrane AMPA Receptor Regulatory Protein Subunit Gamma 2
Method: single particle / : Hale WD, Montano Romero A, Huganir RL, Twomey EC

EMDB-46724:
Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
Method: single particle / : Shaik MM, Myasnikov A, Oldham ML, Baril SA, Kalathur RC, Schuetz JD

PDB-9dbq:
Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
Method: single particle / : Shaik MM, Myasnikov A, Oldham ML, Baril SA, Kalathur RC, Schuetz JD

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-37234:
Molecular mechanism of prostaglandin transporter SLCO2A1
Method: single particle / : Li YH, Qu QH, Zhu ZN, Chao YL, Zhou ZX

EMDB-37222:
Molecular mechanism of prostaglandin transporter SLCO2A1
Method: single particle / : Li YH, Qu QH, Zhu ZN, Chao YL, Zhou ZX

EMDB-37233:
Molecular mechanism of prostaglandin transporter SLCO2A1
Method: single particle / : Li YH, Qu QH, Zhu ZN, Chao YL, Zhou ZX

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more