[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 259 items for (author: zhang & xy)

EMDB-68620:
Human KCNQ3-CaM in apo state
Method: single particle / : Cheng XY, Wan SY, Jiang DX, Zhang HY, Hu B, Hou PP, Zhang J

EMDB-66589:
Cryo-EM structure of the human KCNQ2/3 heteromer channel
Method: single particle / : Cheng XY, Wan SY, Hou PP, Zhang J

EMDB-68626:
Human KCNQ3-XEN1101 complex in the presence of PIP2
Method: single particle / : Cheng XY, Wan SY, Jiang DX, Zhang HY, Hu B, Hou PP, Zhang J

EMDB-66607:
Cryo-EM structure of the human KCNQ2/3 heteromer channel in the XEN1101-bound open state
Method: single particle / : Cheng XY, Wan SY, Hou PP, Zhang J

EMDB-80359:
SARS-CoV-2 Omicron BA.1 spike protein in complex with a self-assembling trivalent nanobody Tr67
Method: single particle / : Jiang XY, Qin Q, Qian JQ, Zhu HX, Huang Q

EMDB-62992:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63000:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-63002:
Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65164:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1 top)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65166:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-65168:
Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Method: single particle / : Liu ZM, Bao ZH, Sun XY, Sun L

EMDB-64213:
Structure of human KCNQ1-CaM complex
Method: single particle / : Hou PP, Zhang J, Cheng XY, Wan SY, Zhong L, Hu B

EMDB-64007:
YcfA from Erwinia amylovora
Method: single particle / : Zhang L, Dou C, Jia XY, Zhu XF, Cheng W

EMDB-64003:
Structure of glycosylphosphatidylinositol transamidase, state 3, unsharpened map
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64000:
Structure of glycosylphosphatidylinositol transamidase,state 1
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64001:
Structure of glycosylphosphatidylinositol transamidase,state 1,unsharpened map
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64002:
Structure of glycosylphosphatidylinositol transamidase,state 2
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64569:
Cryo-EM structure of the human P2X2/3 heteromer receptor - class 1 (1:2)
Method: single particle / : Zhang J, Cheng XY

EMDB-64570:
Cryo-EM structure of the human P2X2/3 heteromer receptor - class 2 (2:1)
Method: single particle / : Zhang J, Cheng XY

EMDB-64567:
Cryo-EM structure of the human P2X2 receptor in the ATP-bound open state
Method: single particle / : Zhang J, Cheng XY

EMDB-64566:
Cryo-EM structure of the human P2X2 receptor in the apo closed state
Method: single particle / : Zhang J, Cheng XY

EMDB-64568:
Cryo-EM structure of the human P2X2 receptor in the ATP-bound desensitised state
Method: single particle / : Zhang J, Cheng XY

EMDB-64572:
Cryo-EM structure of the human P2X3 receptor in the camlipixant-bound inhibited state
Method: single particle / : Zhang J, Cheng XY

EMDB-64571:
Cryo-EM structure of the human P2X2/3 heteromer receptor bound to AF-219
Method: single particle / : Zhang J, Cheng XY

EMDB-66145:
Cryo-EM structure of the apo-ConsOR5-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63174:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-63175:
Cryo-EM structure of the receptor of PL45-Olfr110-Gs complex
Method: single particle / : Rong NK, Zhang MH, Yang F, Sun JP

EMDB-62784:
Structure-Guided Design of Picomolar-level Macrocyclic TRPC5 Channel Inhibitors with Antidepressant Activity
Method: single particle / : Che T, Zhang J, Xiong B, Cheng XY

EMDB-67283:
C1 Symmetry of DNA tesseract
Method: single particle / : Shiu SCC

EMDB-67284:
Octahedral Symmetry of DNA Tesseract
Method: single particle / : Shiu SCC

EMDB-64801:
Structure-Guided Design of Picomolar-level Macrocyclic TRPC5 Channel Inhibitors with Antidepressant Activity
Method: single particle / : Che T, Zhang J, Xiong B, Cheng XY

EMDB-63935:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-64038:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-63715:
Cryo-EM structure of the human TRPA1 ion channel in complex with crotalphine.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

EMDB-63720:
Cryo-EM structure of the human TRPA1 ion channel in ligand-free state.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

EMDB-38961:
Structural mechanism of human HCN1 hyperpolarization-activated channel inhibition by ivabradine
Method: single particle / : Che T, Cheng XY

EMDB-62060:
Cryo-EM structure of the human TRPC1/C5 heteromer
Method: single particle / : Chen YX, Cheng XY, Zhang J

EMDB-39670:
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Method: single particle / : Fang XY, Sun C, Zeng MS, Liu Z

EMDB-60835:
Structure of rat TRPV1 in complex with PSFL426-S5
Method: single particle / : Chen X, Yu Y

EMDB-39865:
Cryo-EM structure of human GPR4-Gs complex
Method: single particle / : Chen LN, Mao CY, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Cai XJ, Zhang Y

EMDB-39866:
Cryo-EM structure of human GPR4-Gi complex
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-63219:
Cryo-EM structure of human apo inactive GPR4
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-63220:
Cryo-EM structure of antagonist-bounded inactive human GPR4
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-38801:
Cryo-EM structure of Short-wave-sensitive opsin 1
Method: single particle / : Peng Q, Jiang HH, Cheng XY, Li J, Zhang J

EMDB-60816:
Cryo-EM structure of PhyB(Y276H,1-908)-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-60860:
Cryo-EM structure of full-length phyB(Y276H)-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-61582:
Cryo-EM structure of phyB-PIF6beta complex
Method: single particle / : Jia HL, Guan ZY, Ding JY, Wang XY, Ma L, Yin P

EMDB-60724:
Cryo-EM structure of the tetrameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Wei XY, Jia N

EMDB-60725:
Cryo-EM structure of the hexameric DRT9-ncRNA complex
Method: single particle / : Zhang JT, Song XY, Xia YS, Liu YJ, Jia N

EMDB-38008:
Cryo-EM structure of H5 hemagglutinin from human-infecting H5N8 influenza virus in complex with Sialyl-Lewis X
Method: single particle / : Jin XY, Han P, Song H, Qi JX

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more