[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 22,645 items for (author: yu & z)

EMDB-56541:
RNA polymerase II bound to RPAP2 and Gdown1 (Map B)
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-56542:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

PDB-28jc:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-68781:
In situ cryo sub-tomogram average of axoneme in sperm flagella from Rgs22 knockout mice
Method: subtomogram averaging / : Ye-Jun P

EMDB-59279:
Cryo-EM structure of native, mature HERV-K pentameric capsomer
Method: single particle / : Lyu C, Shen Y, Zhang P

EMDB-59280:
Cryo-EM structure of native, mature HERV-K hexameric capsomer
Method: single particle / : Lyu C, Shen Y, Zhang P

PDB-32yy:
Cryo-EM structure of native, mature HERV-K pentameric capsomer
Method: single particle / : Lyu C, Shen Y, Zhang P

PDB-32zb:
Cryo-EM structure of native, mature HERV-K hexameric capsomer
Method: single particle / : Lyu C, Shen Y, Zhang P

EMDB-74755:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H91
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-78467:
tC19Z RNA polymerase ribozyme, apo state
Method: single particle / : Hingey J, Spellmon N, Yu Z, Toor N, Rudolfs B, Mancino A, Haack DB, Das R

PDB-37so:
tC19Z RNA polymerase ribozyme, apo state
Method: single particle / : Hingey J, Spellmon N, Yu Z, Toor N, Rudolfs B, Mancino A, Haack DB, Das R

EMDB-80401:
Cap of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

EMDB-80402:
side fiber of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

EMDB-80403:
F2-pyocin tail Tip
Method: single particle / : Gu ZW, Xie YF, Wang JW

EMDB-80404:
tail fiber of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

EMDB-80538:
F2-pyocin FNIII and AHS
Method: single particle / : Gu ZW, Xie YF, Wang JW

PDB-25vd:
Cap of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

PDB-25ve:
side fiber of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

PDB-25vf:
F2-pyocin tail Tip
Method: single particle / : Gu ZW, Xie YF, Wang JW

PDB-25vj:
tail fiber of F2-pyocin
Method: single particle / : Gu ZW, Xie YF, Wang JW

PDB-26ci:
F2-pyocin FNIII and AHS
Method: single particle / : Gu ZW, Xie YF, Wang JW

EMDB-63757:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

EMDB-65041:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

PDB-9mao:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

PDB-9vfx:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

EMDB-80113:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

EMDB-80118:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

EMDB-80125:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

PDB-25hr:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with imipenem
Method: single particle / : Zhu S

PDB-25hs:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI in complex with aztreonam
Method: single particle / : Zhu S

PDB-25hw:
Cryo-EM structure of Pseudomonas aeruginosa FtsQBLWI
Method: single particle / : Zhu S

EMDB-75101:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

PDB-10dw:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

EMDB-68387:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

PDB-22jw:
Perinereis linea erythrocruorin
Method: single particle / : Deng JX, Jiang YL, Zhou CZ

EMDB-63507:
Cryo-EM structure of the chromatin remodeler Rad26 N-terminal deletion mutant bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Haruhiko E, Sekine S, Kagawa W, Kurumizaka H

EMDB-73059:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-FAT10(t)/FAT10(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

EMDB-73060:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-Ub(t)/Ub(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

EMDB-73079:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/FAT10(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

EMDB-73081:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/Ub(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

PDB-9ykv:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-FAT10(t)/FAT10(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

PDB-9ykw:
Cryo-EM structure of double-loaded human UBA6-UBE2Z-Ub(t)/Ub(a) thioester mimetic complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

PDB-9ylb:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/FAT10(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Nayak D, Bury PS, Nayak A, Wasmuth EV, Olsen SK

PDB-9ylf:
Cryo-EM structure of single-loaded human UBA6-UBE2Z/Ub(a) adenylate complex.
Method: single particle / : Jia L, Ruben EA, Bury PS, Nayak D, Wasmuth EV, Olsen SK

EMDB-68020:
The cryo-EM map of p24 complex at pH 5.0
Method: single particle / : Hua ZK, Zhang D, Zhang M, Yu HJ

EMDB-66758:
Plasmodium vivax Perforin-like protein 2 K735C/E771C mutant(PvPLP2 K735C/E771C) prepore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66759:
Plasmodium vivax Perforin-like protein 2 pore on membrane by cryoET subtomogram averaging
Method: subtomogram averaging / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66760:
Structure of Plasmodium vivax Perforin-like protein2 pore in ring form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

EMDB-66761:
Structure of Plasmodium vivax Perforin-like protein2 pore in acr form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

PDB-9xda:
Structure of Plasmodium vivax Perforin-like protein2 pore in ring form
Method: single particle / : Zhang Y, Zhong LJ, Song Y, Gilbert RJC, Ni T, Yu XL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more