[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 23,718 items for (author: yu & w)

EMDB-67818:
Cryo-EM structure of homotypic CENP-A nucleosome isolated from human cells
Method: single particle / : Tanida E, Hatazawa S, Oishi T, Kobayashi Y, Ogasawara M, Jaskiewicz MA, Takizawa Y, Kurumizaka H

EMDB-67819:
Cryo-EM structure of heterotypic CENP-A/H3 nucleosome isolated from human cells
Method: single particle / : Tanida E, Hatazawa S, Oishi T, Kobayashi Y, Ogasawara M, Jaskiewicz MA, Takizawa Y, Kurumizaka H

PDB-21md:
Cryo-EM structure of homotypic CENP-A nucleosome isolated from human cells
Method: single particle / : Tanida E, Hatazawa S, Oishi T, Kobayashi Y, Ogasawara M, Jaskiewicz MA, Takizawa Y, Kurumizaka H

PDB-21me:
Cryo-EM structure of heterotypic CENP-A/H3 nucleosome isolated from human cells
Method: single particle / : Tanida E, Hatazawa S, Oishi T, Kobayashi Y, Ogasawara M, Jaskiewicz MA, Takizawa Y, Kurumizaka H

EMDB-76826:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1) in the apo state
Method: single particle / : Ren Z, Lee SY

EMDB-76827:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 1 (post UDP hydrolysis) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

EMDB-76828:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 2 (pre-translocation) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

EMDB-76829:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 3 (post-translocation) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

EMDB-76830:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), bound to diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76831:
Candida albicans Chitin synthase 1 (CaChs1) bound to UDP-GlcNAc and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76832:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-2), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76833:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-3), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76834:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-4), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76835:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-5), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76836:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-6), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-76837:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-7), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xf:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1) in the apo state
Method: single particle / : Ren Z, Lee SY

PDB-12xg:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 1 (post UDP hydrolysis) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

PDB-12xh:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 2 (pre-translocation) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

PDB-12xi:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), state 3 (post-translocation) after 5 min reaction
Method: single particle / : Ren Z, Lee SY

PDB-12xj:
Structure of Class II chitin synthase, Chs1, from Candida albicans (CaChs1), bound to diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xk:
Candida albicans Chitin synthase 1 (CaChs1) bound to UDP-GlcNAc and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xl:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-2), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xm:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-3), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xn:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-4), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xo:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-5), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xp:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-6), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

PDB-12xq:
Candida albicans Chitin synthase 1 (CaChs1) intermediate state (DA-7), bound to UDP and diynyl arylamine (DA, aka RO-09-3143)
Method: single particle / : Ren Z, Lee SY

EMDB-81712:
Cryo-EM structure of hydrogenase-2 in complex with L1 (left)
Method: single particle / : Zhang N, Huang Y, Zhang L

EMDB-81713:
Cryo-EM structure of hydrogenase-2 in complex with L1 (right)
Method: single particle / : Zhang N, Huang Y, Zhang L

PDB-28fs:
Cryo-EM structure of hydrogenase-2 in complex with L1 (left)
Method: single particle / : Zhang N, Huang Y, Zhang L

PDB-28fu:
Cryo-EM structure of hydrogenase-2 in complex with L1 (right)
Method: single particle / : Zhang N, Huang Y, Zhang L

EMDB-66903:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up)
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-66904:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs, focused refinement of RBD and Fab region
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-72334:
Human mitochondrial ClpP in complex with OICR-18704 in the heptameric state
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72336:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (minimal opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72337:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (intermediate opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72338:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (maximal opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72339:
Human mitochondrial ClpP V62A variant
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-71916:
Menthol-bound mouse TRPM8 in complex with AITC and PIP2 in a closed (C1M') state
Method: single particle / : Lee HJ, Lee SY

EMDB-71917:
Menthol-bound mouse TRPM8-I846V in complex with PIP2 in an intermediate (C2M, 20C) state
Method: single particle / : Lee HJ, Lee SY

EMDB-71918:
The pre-open state (pre-OM, 20C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-71919:
AITC- and PIP2-bound mouse TRPM8 in a closed (C1A) state
Method: single particle / : Lee HJ, Lee SY

EMDB-72557:
The cold-intermediate state (C2M, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-72558:
The cold-open state (OM, 4C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

EMDB-74963:
Menthol-and PIP2-bound mouse TRPM8 in a closed (C1M) state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwe:
Menthol-bound mouse TRPM8 in complex with AITC and PIP2 in a closed (C1M') state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwf:
Menthol-bound mouse TRPM8-I846V in complex with PIP2 in an intermediate (C2M, 20C) state
Method: single particle / : Lee HJ, Lee SY

PDB-9pwg:
The pre-open state (pre-OM, 20C), menthol-bound mouse TRPM8-I846V in complex with AITC and PIP2
Method: single particle / : Lee HJ, Lee SY

PDB-9pwh:
AITC- and PIP2-bound mouse TRPM8 in a closed (C1A) state
Method: single particle / : Lee HJ, Lee SY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more