[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 22,640 items for (author: yu & w)

EMDB-66278:
Human TOM-TIM22 supercomplex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66279:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66280:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66281:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv1:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv2:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv3:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72246:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72247:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72249:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72252:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72253:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72254:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72259:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72261:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72262:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72263:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72264:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72270:
Rad55-Rad57-SHU homologous recombination complex. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-65509:
Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Method: single particle / : Zhang J, Wang C

PDB-9w0n:
Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Method: single particle / : Zhang J, Wang C

EMDB-66002:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66003:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG solo structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66004:
Subtomogram averaging of spike-P17-IgG solo structure on fixed SARS-CoV-2
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66005:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66006:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in 1-RBD-up conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66007:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in closed conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-69908:
Cryo-EM structure of TRP melastatin channel in the desensitized state, with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69909:
Cryo-EM structure of TRP melastatin channel with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69929:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 3, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69930:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69932:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 2 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69933:
Cryo-EM structure of TRP melastatin channel in the putative twofold intermediate 1 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69934:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-80306:
Cryo-EM Structure of PLPP3
Method: single particle / : Long T, Wu Y

EMDB-81156:
Structure of PLPP3 prepared in the presence of EDTA
Method: single particle / : Long T

PDB-25qp:
Cryo-EM Structure of PLPP3
Method: single particle / : Long T, Wu Y

EMDB-73275:
Cryo-EM structure of a preformed dimer of the C. elegans EGFR (LET-23) extracellular region
Method: single particle / : Zuo Y, Han L, Ferguson KM

EMDB-73276:
Cryo-EM structure of an active dimer of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3
Method: single particle / : Zuo Y, Han L, Ferguson KM

EMDB-73277:
Cryo-EM structure of an inactive dimer of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3.
Method: single particle / : Zuo Y, Han L, Ferguson KM

EMDB-73278:
Cryo-EM structure of a weak dimer of the C. elegans EGFR (LET-23) extracellular region with a domain IV loop deletion
Method: single particle / : Zuo Y, Walker K, Han L, Ferguson KM

EMDB-73279:
Cryo-EM structure of an active dimer of the C. elegans EGFR (LET-23) extracellular region with a domain IV loop deletion bound to LIN-3.
Method: single particle / : Zuo Y, Walker K, Han L, Ferguson KM

PDB-9yor:
Cryo-EM structure of a preformed dimer of the C. elegans EGFR (LET-23) extracellular region
Method: single particle / : Zuo Y, Han L, Ferguson KM

PDB-9yos:
Cryo-EM structure of an active dimer of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3
Method: single particle / : Zuo Y, Han L, Ferguson KM

PDB-9yot:
Cryo-EM structure of an inactive dimer of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3.
Method: single particle / : Zuo Y, Han L, Ferguson KM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more