[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 35 items for (author: yip & mcj)

EMDB-44949:
TXNL1-bound proteasome (focused on TXNL1)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44952:
TXNL1-bound proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44910:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44927:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44928:
M2A Midnolin Proteasome (translocating, focused on PSMD2)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44929:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44930:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19659:
Human RNF213: focused refinement of E3-RING domain
Method: single particle / : Naydenova K, Randow F

EMDB-40344:
Terminating ribosome with SRI-41315
Method: single particle / : Yip MCJ, Coelho JPL, Oltion K, Tauton J, Shao S

EMDB-40345:
terminating rabbit ribosome with SRI-41315 (focused on ABCE1)
Method: single particle / : Yip MCJ, Coelho JPL, Oltion K, Tauton J, Shao S

EMDB-26612:
Complex of UBE2O with NAP1L1 and ubiquitylated uL2
Method: single particle / : Yip MCJ, Sedor SF, Shao S

EMDB-26614:
Complex of UBE2O with NAP1L1
Method: single particle / : Yip MCJ, Sedor SF, Shao S

EMDB-26615:
Complex of UBE2O with NAP1L1 and ubiquitylated uL2 (focused on UBE2O-Ub)
Method: single particle / : Yip MCJ, Sedor SF, Shao S

EMDB-26616:
SfSTING with c-di-GMP single fiber
Method: single particle / : Morehouse BR, Yip MCJ, Keszei AFA, McNamara-Bordewick NK, Shao S, Kranzusch PJ

EMDB-26617:
SfSTING with c-di-GMP double fiber
Method: single particle / : Morehouse BR, Yip MCJ, Keszei AFA, McNamara-Bordewick NK, Shao S, Kranzusch PJ

EMDB-26618:
SfSTING with cGAMP (masked)
Method: single particle / : Morehouse BR, Yip MCJ, Keszei AFA, McNamara-Bordewick NK, Shao S, Kranzusch PJ

EMDB-26619:
SfSTING with cGAMP
Method: single particle / : Morehouse BR, Yip MCJ, Keszei AFA, McNamara-Bordewick NK, Shao S, Kranzusch PJ

EMDB-24703:
Metazoan pre-targeting GET complex cBUGG (C1)
Method: single particle / : Keszei AFA, Yip MCJ

EMDB-24704:
Metazoan pre-targeting GET complex with SGTA (partly masked)
Method: single particle / : Keszei AFA, Yip MCJ

EMDB-24700:
Metazoan pre-targeting GET complex (cBUGG-in)
Method: single particle / : Keszei AFA, Yip MCJ

EMDB-24701:
Metazoan pre-targeting GET complex (cBUGG-out)
Method: single particle / : Keszei AFA, Yip MCJ

EMDB-24702:
Metazoan pre-targeting GET complex with SGTA (cBUGGS)
Method: single particle / : Keszei AFA, Yip MCJ

EMDB-9237:
Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9240:
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9242:
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9234:
Rabbit 80S ribosome with a P-site tRNA (unrotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9235:
Rabbit 80S ribosome with a P- and E-site tRNA
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9236:
Rabbit 80S ribosome with a Z-site tRNA (unrotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

EMDB-9241:
Rabbit 80S ribosome with A/P and P/E tRNAs (rotated state)
Method: single particle / : Brown A, Baird MR, Yip MCJ, Murray J, Shao S

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more