[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 170 items for (author: ying & tl)

EMDB-61458:
Structure of cargo complex (BtpeA-BtaeB-BtapC) bound to the VgrG spike from the Type VI secretion system
Method: single particle / : Zheng SN, Li WX, Chen Z, Gao X

PDB-9jg8:
Structure of cargo complex (BtpeA-BtaeB-BtapC) bound to the VgrG spike from the Type VI secretion system
Method: single particle / : Zheng SN, Li WX, Chen Z, Gao X

EMDB-42954:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-42955:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3u:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3v:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-41639:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41640:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41641:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41642:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tve:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvf:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8tvg:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvh:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41636:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41643:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8tvb:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvi:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vwp:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-36800:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36801:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrA octamer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36802:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrB dimer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36803:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of MgCl2
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36804:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38477:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38478:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-16791:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-16792:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-16793:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, C16S, C20S, C870S, T1279C mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

PDB-8cpz:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

PDB-8cq0:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

PDB-8cq2:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, C16S, C20S, C870S, T1279C mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-36948:
Human gamma-secretase in complex with a substrate mimetic
Method: single particle / : Shi YG, Zhou R, Wolfe MS

PDB-8k8e:
Human gamma-secretase in complex with a substrate mimetic
Method: single particle / : Shi YG, Zhou R, Wolfe MS

EMDB-36326:
Cryo-EM structure of the GLP-1R/GCGR dual agonist peptide15-bound human GLP-1R-Gs complex
Method: single particle / : Yang L, Zhou QT, Dai AT, Zhao FH, Chang RL, Ying TL, Wu BL, Yang DH, Wang MW, Cong ZT

EMDB-34449:
Cryo-EM Structure of the KBTBD2-Cul3-Rbx1 tetrameric complex
Method: single particle / : Hu Y, Mao Q, Chen Z, Sun L

EMDB-34450:
Cryo-EM Structure of the KBTBD2-Cul3-Rbx1 hexameric complex
Method: single particle / : Hu Y, Mao Q, Chen Z, Sun L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more