[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,147 items for (author: ye & ff)

EMDB-72665:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72668:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72674:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72675:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72676:
Homomeric Glycine Receptor alpha2 with PTX in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72683:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Apo State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72688:
Homomeric Glycine Receptor alpha2 with PTX in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72689:
Homomeric Glycine Receptor alpha2 with PTX in an Apo State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-72690:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Closed State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y7p:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y7w:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y7x:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y7z:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y80:
Homomeric Glycine Receptor alpha2 with PTX in a Desensitized State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y8z:
Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Apo State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y94:
Homomeric Glycine Receptor alpha2 with PTX in an Open State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y95:
Homomeric Glycine Receptor alpha2 with PTX in an Apo State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

PDB-9y96:
Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Closed State
Method: single particle / : Klemm E, Gibbs E, Chakrapani S

EMDB-50014:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9evt:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-52852:
structure of two human ELF2 transcription factors in complex with a nucleosome
Method: single particle / : Xiao T, Crowe-McAuliffe C, Dienemann C, Taipale J

EMDB-71415:
Yeast Respiratory SuperComplex - deltaQCR6
Method: single particle / : Baker ML

EMDB-71416:
Yeast Respiratory SuperComplex - non uniform refinement
Method: single particle / : Baker ML

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-52853:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9ign:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-51502:
Cryo EM structure of the E307T mutant of the human P2X4 receptor in complex with the anthraquinone derivative PSB-0704
Method: single particle / : Nagel J, Vaaen V, Torp J, Geyer M, Claff T, Hagelueken G, Mueller CE

PDB-9gp7:
Cryo EM structure of the E307T mutant of the human P2X4 receptor in complex with the anthraquinone derivative PSB-0704
Method: single particle / : Nagel J, Vaaen V, Torp J, Geyer M, Claff T, Hagelueken G, Mueller CE

EMDB-51718:
High resolution structure of B. oleracea mitoribosome
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9gyt:
High resolution structure of B. oleracea mitoribosome
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-51664:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9gxj:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-52488:
Cryo-EM map of human UBR4/KCMF1/CALM1 in complex with UBE2A
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52491:
Cryo-EM structure of UBR4/KCMF1/CALM1 (consensus map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52494:
Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (UBR/BS1/ZZ-DZB focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52504:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (consensus map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52513:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (BS1/UBR/ZZ-DZB focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-52516:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term focused refinement)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-53425:
Cryo-EM structure of the human UBR4 complex (ZZ-DZB deletion variant)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-51027:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 dimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51028:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 trimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51029:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 tetramer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more