[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,263 items for (author: ye & d)

EMDB-62050:
Cryo-EM structure of inner membrane TolQRA complex in CYMAL-6-Neopentyl Glycol detergent micelles
Method: single particle / : Yeow J, Chng SS

EMDB-62251:
Cryo-EM structure of inner membrane TolQRA complex in CYMAL-6-Neopentyl Glycol detergent micelles
Method: single particle / : Yeow J, Chng SS

PDB-9k49:
Cryo-EM structure of inner membrane TolQRA complex in CYMAL-6-Neopentyl Glycol detergent micelles
Method: single particle / : Yeow J, Chng SS

PDB-9kch:
Cryo-EM structure of inner membrane TolQRA complex in CYMAL-6-Neopentyl Glycol detergent micelles
Method: single particle / : Yeow J, Chng SS

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-49124:
Consensus reconstruction of the Dp71L-PP1A-eIF2alpha holophosphatase stabilized by G-actin/DNAseI
Method: single particle / : Reineke LC, Dalwadi U, Croll T, Arthur C, Lee DJ, Frost A, Costa-Mattioli M

EMDB-49162:
Focused refinement of G-actin within the Dp71L-PP1A-eIF2alpha-DNAseI-G-actin complex
Method: single particle / : Dalwadi U, Reineke LC, Lee DJ, Arthur C, Croll T, Frost A, Costa-Mattioli M

EMDB-49163:
Focused refinement of the Dp71L-eIF2alpha-PP1A subcomplex within the holo-phosphatase complex.
Method: single particle / : Dalwadi U, Reineke LC, Lee DJ, Arthur C, Croll T, Frost A, Costa-Mattioli M

EMDB-49164:
Focused refinement of DNAseI within the Dp71L-eIF2alpha-PP1A-Gactin-DNAseI holo-phosphatase complex.
Method: single particle / : Dalwadi U, Reineke LC, Lee DJ, Arthur C, Croll T, Frost A, Costa-Mattioli M

EMDB-49223:
Viral protein DP71L in complex with phosphorylated eIF2alpha (NTD) and protein phosphatase 1A (D64A), stabilized by G-actin/DNAseI
Method: single particle / : Reineke LC, Dalwadi U, Croll T, Arthur C, Lee DJ, Frost A, Costa-Mattioli M

PDB-9nb9:
Viral protein DP71L in complex with phosphorylated eIF2alpha (NTD) and protein phosphatase 1A (D64A), stabilized by G-actin/DNAseI
Method: single particle / : Reineke LC, Dalwadi U, Croll T, Arthur C, Lee DJ, Frost A, Costa-Mattioli M

EMDB-52047:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcf:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-47554:
Octopus sensory receptor CRT1 bound to Norharmane
Method: single particle / : Jiang H, Hibbs RE

EMDB-47555:
Octopus sensory receptor CRT1 in complex with H3C
Method: single particle / : Jiang H, Hibbs RE

EMDB-47556:
octopus sensory receptor CRT1 bound to Lumichrome
Method: single particle / : Jiang H, Hibbs RE

PDB-9e6b:
Octopus sensory receptor CRT1 bound to Norharmane
Method: single particle / : Jiang H, Hibbs RE

PDB-9e6c:
Octopus sensory receptor CRT1 in complex with H3C
Method: single particle / : Jiang H, Hibbs RE

PDB-9e6d:
octopus sensory receptor CRT1 bound to Lumichrome
Method: single particle / : Jiang H, Hibbs RE

EMDB-47342:
Cryo-EM structure of Pre-Chi dynein bound to Lis1
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47360:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47370:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47371:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47372:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47373:
Cryo-EM structure of Phi dynein
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47377:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47429:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47430:
Cryo-EM structure of Pre-Chi dynein tail
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-47443:
Cryo-EM structure of Phi dynein tail
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9dzy:
Cryo-EM structure of Pre-Chi dynein bound to Lis1
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0k:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0t:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0u:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0w:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0x:
Cryo-EM structure of Phi dynein
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e0y:
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e22:
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e23:
Cryo-EM structure of Pre-Chi dynein tail
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

PDB-9e28:
Cryo-EM structure of Phi dynein tail
Method: single particle / : Nguyen KHV, Kendrick AA, Leschziner AE

EMDB-42495:
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

EMDB-42541:
E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

EMDB-42714:
E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

EMDB-42721:
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

EMDB-42832:
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

EMDB-42840:
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Method: single particle / : Kimbrough EM, Dunham CM, Nguyen HA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more