[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,793 items for (author: ye & d)

EMDB-56126:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

PDB-9tq7:
Neuraminidase NA isolated from the H1N1 strain A/Victoria/2570/2019 propagated in eggs
Method: single particle / : Borowska A, Kang H, Slotboom DJ, Daniels R

EMDB-54010:
Human Signal Peptidase in complex with artificial Signal Peptide L11
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

EMDB-54011:
Apo Structure of the Human Signal Peptidase
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

PDB-9rjb:
Human Signal Peptidase in complex with artificial Signal Peptide L11
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

PDB-9rjc:
Apo Structure of the Human Signal Peptidase
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-49451:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49456:
Cryo-EM structure of the Class 2 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni3:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni8:
Cryo-EM structure of the Class 2 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-72216:
The CryoEM structure of Rhesus macaque 1G3 and PGT121 Fabs in complex with BG505 SOSIP.664
Method: single particle / : Nguyen DN, Tolbert WD, Pazgier M

PDB-9q3x:
The CryoEM structure of Rhesus macaque 1G3 and PGT121 Fabs in complex with BG505 SOSIP.664
Method: single particle / : Nguyen DN, Tolbert WD, Pazgier M

EMDB-71658:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71659:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71660:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71661:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71662:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, kim D

EMDB-71663:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW

EMDB-49455:
Cryo-EM structure of the Class 3 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49460:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni7:
Cryo-EM structure of the Class 3 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9nif:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-57549:
Cryo-EM structure of ComEC from Neomoorella carbonis
Method: single particle / : Deselaers S, Wang D, Cairoli T, Afanasyev P, Hospenthal MK

PDB-30bu:
Cryo-EM structure of ComEC from Neomoorella carbonis
Method: single particle / : Deselaers S, Wang D, Cairoli T, Afanasyev P, Hospenthal MK

EMDB-70636:
A-beta42-Met-R-SO amyloidal fibril - class3
Method: helical / : Chan KL, Boyer D, Balasco Serrao VH, Raskatov JA

EMDB-70637:
Abeta-42-Met35-(R)-SO - class2
Method: helical / : Chan KL, Boyer D, Balasco Serrao VH, Raskatov JA

PDB-9onc:
A-beta42-Met-R-SO amyloidal fibril - class3
Method: helical / : Chan KL, Boyer D, Balasco Serrao VH, Raskatov JA

EMDB-57548:
Cryo-EM structure of Beta-lactamase-like domain from Neomoorella carbonis
Method: single particle / : Deselaers S, Wang D, Cairoli T, Afanasyev P, Hospenthal MK

PDB-30bt:
Cryo-EM structure of Beta-lactamase-like domain from Neomoorella carbonis
Method: single particle / : Deselaers S, Wang D, Cairoli T, Afanasyev P, Hospenthal MK

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-71953:
ATTR cardiac amyloid fibrils apex1
Method: helical / : Schaefer JH, Lander GC

EMDB-71960:
ATTR cardiac amyloid fibrils apex2
Method: helical / : Schaefer JH, Lander GC

EMDB-71962:
ATTR V122I cardiac amyloid fibrils
Method: helical / : Schaefer JH, Lander GC

EMDB-73312:
ATTR Collagen VI Cofibrils
Method: single particle / : Schaefer JH, Lander GC

EMDB-73313:
Human Collagen VI microfibril
Method: single particle / : Schaefer JH, Lander GC

PDB-9px6:
ATTR cardiac amyloid fibrils apex1
Method: helical / : Schaefer JH, Lander GC

PDB-9px7:
ATTR cardiac amyloid fibrils apex2
Method: helical / : Schaefer JH, Lander GC

PDB-9px9:
ATTR V122I cardiac amyloid fibrils
Method: helical / : Schaefer JH, Lander GC

EMDB-70806:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osg:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

EMDB-49452:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex dimer on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49453:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49454:
Cryo-EM structure of the Class 1 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49458:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex dimer on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49459:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49519:
Cryo-EM structure of the Class 1 PI3K alpha/KRas complex on POPC/POPS nanodiscs low-pass filtered to 10 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni4:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex dimer on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more