[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,563 items for (author: xu & m)

EMDB-68781:
In situ cryo sub-tomogram average of axoneme in sperm flagella from Rgs22 knockout mice
Method: subtomogram averaging / : Ye-Jun P

EMDB-63939:
G protein-coupled receptor complex
Method: single particle / : Wang XH, Li WM

PDB-9u7l:
G protein-coupled receptor complex
Method: single particle / : Wang XH, Li WM

EMDB-68865:
Cryo-EM structure of RSC complex from Chaetomium thermophilum
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68925:
Cryo-EM structure of SWI/SNF complex from Chaetomium thermophilum
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68926:
The focused refined map for ATPase-ARP-NCP region from the Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68927:
The consensus map for the complete Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68928:
The focused refined map for the base module from the Chaetomium thermophilum RSC-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68935:
Cryo-EM structure of Chaetomium thermophilum RSC bound to a nucleosome
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68940:
The consensus map for the complete Chaetomium thermophilum SWI/SNF-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68942:
The focused refined map for the base module from the Chaetomium thermophilum SWI/SNF-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68952:
The focused refined map for the ATPase-ARP module from the Chaetomium thermophilum SWI/SNF-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68953:
The focused refined map for the nucleosome region from the Chaetomium thermophilum SWI/SNF-NCP complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-68999:
Cryo-EM structure of Chaetomium thermophilum SWI/SNF bound to a nucleosome
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-69438:
The consensus map for the Chaetomium thermophilum RSC complex in the free state
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-69475:
The focused refined map for RSC-specific lobe of the Chaetomium thermophilum RSC complex
Method: single particle / : Ma SS, Liu MD, Shen QT, Chen Y

EMDB-65636:
Cryo-EM structure of inhibitor E822-1968 bound human urea transporter A2.
Method: single particle / : Huang S, Sun J

EMDB-65637:
Cryo-EM structure of inhibitor M353-0039 bound urea transporter A2.
Method: single particle / : Huang S, Sun J

PDB-9w4k:
Cryo-EM structure of inhibitor E822-1968 bound human urea transporter A2.
Method: single particle / : Huang S, Sun J

PDB-9w4l:
Cryo-EM structure of inhibitor M353-0039 bound urea transporter A2.
Method: single particle / : Huang S, Sun J

EMDB-59026:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

PDB-32nj:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

EMDB-80306:
Cryo-EM Structure of PLPP3
Method: single particle / : Long T, Wu Y

EMDB-81156:
Structure of PLPP3 prepared in the presence of EDTA
Method: single particle / : Long T

PDB-25qp:
Cryo-EM Structure of PLPP3
Method: single particle / : Long T, Wu Y

EMDB-64756:
Apo SLC36A1
Method: single particle / : Zhang SS

EMDB-64757:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

EMDB-64759:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

EMDB-64762:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

PDB-9v3t:
Apo SLC36A1
Method: single particle / : Zhang SS

PDB-9v3v:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

PDB-9v3x:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

PDB-9v3z:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

EMDB-70719:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

PDB-9opj:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

EMDB-65527:
in situ Tspan7 spiral in cellular retraction fiber
Method: subtomogram averaging / : Jia X, Wang DJ, Li XP, Liu N, Yu L, Wang HW

EMDB-68177:
C5a-desArg bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68262:
C5a bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68263:
C5a bound C5aR1 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68264:
C5a bound C5aR1 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68516:
C5a bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68517:
C5a bound C5aR2 in complex with beta-arrestin1(focused on Receptor)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68520:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1 (Focus on Receptor)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68524:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68525:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1 (Focus on Arrestin)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68529:
C5a-desArg bound C5aR2 in complex with beta-arrestin1(focus on receptor)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68531:
C5a-desArg bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68534:
C5a-desArg bound C5aR2 in complex with beta-arrestin1 (Focus on Arrestin)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-77405:
C5a bound C5aR2 in complex with beta-arrestin1 (focused on barr1-Fab30 complex)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

PDB-22cr:
C5a-desArg bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more