[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 172 items for (author: xu & jy)

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-67108:
Cryo-EM structure of Receptor of GPR75
Method: single particle / : Wu C, Yuan Q

EMDB-67109:
The cryo_EM structure of GPR75 complex
Method: single particle / : Wu C, Yuan Q

EMDB-67110:
A composite Cryo-EM structure of GPR75
Method: single particle / : Yuan Q, Wu C

EMDB-67119:
Cryo-EM structure of apo form of GPR75-bRIL-Fab complex
Method: single particle / : Wu C, Yuan Q

EMDB-62932:
Cryo-EM structure of the apo-form succinate dehydrogenase from Chloroflexus aurantiacus
Method: single particle / : Zhang X, Wu JY, Xu XL

EMDB-62933:
Cryo-EM structure of the lipid-bound succiante dehydrogenase from Chloroflexus aurantiacus
Method: single particle / : Zhang X, Wu JY, Xu XL

EMDB-62934:
Cryo-EM structure of the MK7-bound succinate dehydrogenase from Chloroflexus aurantiacus
Method: single particle / : Zhang X, Wu JY, Xu XL

EMDB-62935:
Cryo-EM structure of the MK4-bound succinate dehydrogenase from Chloroflexus aurantiacus
Method: single particle / : Zhang X, Wu JY, Xu XL

EMDB-61743:
Structural Insights into Selective Antagonism of TG6-129 and EP4 Prostaglandin Receptor
Method: single particle / : Wu YL, Zhang H, Xu JY, Wu CR, Xu EH

EMDB-61744:
Structural Insights into Selective Antagonism Grapiprant and EP4 Prostaglandin Receptor
Method: single particle / : Wu YL, Zhang H, Xu JY, Wu CR, Xu EH

EMDB-61762:
Structural Insights into Selective Antagonism of PF04418948 and EP2 Prostaglandin Receptor
Method: single particle / : Wu YL, Zhang H, Xu JY, Wu CR, Xu EH

EMDB-61763:
Structural Insights into Selective Antagonism of TG6-129 and EP2 Prostaglandin Receptor
Method: single particle / : Wu YL, Zhang H, Xu JY, Wu CR, Xu EH

EMDB-62490:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-62491:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in UQ1-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-62495:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in pydiflumetofen-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-63115:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in Y19315-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-63958:
Cryo-EM structure of Fusobacterium nucleatum CbpF in complex with human CEACAM5
Method: single particle / : Li LJ, Shen F, Zhao X, Gao GF

EMDB-63959:
Cryo-EM structure of Fusobacterium nucleatum CbpF in complex with human CEACAM1
Method: single particle / : Li LJ, Shen F, Zhao X, Gao GF

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-61724:
Cryo-EM structure of BTN2A1 in complex with antagonist antibody TH002
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61732:
Cryo-EM structure of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 in complex with agonist antibody TH001
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61733:
Extracellular region of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 complex (EMReady)
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61734:
TM/JM/B30.2 regions of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 complex (EMReady)
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61735:
Raw consensus map of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 complex
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61736:
Cryo-EM structure of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 complex
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61737:
Extracellular region of the Vgamma9Vdelta2 TCR-engaged BTN3A1-BTN3A2-BTN2A1 complex (EMReady)
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61738:
TM/JM/B30.2 regions of the Vgamma9Vdelta2 TCR-engaged BTN3A1-BTN3A2-BTN2A1 complex (EMReady)
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61739:
Raw consensus map of the Vgamma9Vdelta2 TCR-engaged BTN3A1-BTN3A2-BTN2A1 complex
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61740:
Cryo-EM structure of the Vgamma9Vdelta2 TCR-engaged BTN3A1-BTN3A2-BTN2A1 complex
Method: single particle / : Zhang M, Wang YQ, Xiao JY

EMDB-61620:
Cryo-EM structure of human SLFN14
Method: single particle / : Luo M, Jia XD, Wang ZW, Yang JY, Zhang QF, Gao S

EMDB-44229:
Cryo-EM structure of the LAPTH-bound PTH1R in complex with Gq
Method: single particle / : Zhang X, Liu H, Zhang C, Vilardaga JP

EMDB-52074:
Structure of the Xenorceptide A2-bound E. coli BAM complex (BamABCDE)
Method: single particle / : Jakob RP, Modaresi SM, Maier T, Hiller S

EMDB-35962:
Immune complex of W328-6H2 Fab binding the RBD of Omicron BA.1 6p spike protein added BS3 crosslinker
Method: single particle / : Nan XY, Li YJ, Li JY

EMDB-41459:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD, Xu J

EMDB-38694:
Human TOM complex with whole Tom20
Method: single particle / : Tian XY, Su JY, Sui SF

EMDB-60277:
TOM core complex
Method: single particle / : Tian XY, Su JY, Sui SF

EMDB-60278:
whole Tom20
Method: single particle / : Tian XY, Su JY, Sui SF

EMDB-38823:
Cryo-EM structure of the 123-316 scDb/PT-RBD complex
Method: single particle / : Jia GW, Tong Z, Tong JY, Su ZM

EMDB-36840:
3-Methylcrotonyl-CoA Carboxylase in MCCD state with Acetyl CoA
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36704:
Human 3-methylcrotonyl-CoA carboxylase in MCCU state with MCoA
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36705:
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H2 state with MCoA
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36706:
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state with MCoA
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36128:
Human MCC in MCCU state
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36136:
Human MCC in MCCD state
Method: single particle / : Liu DS, Su JY, Tian XY

EMDB-36034:
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H2 state
Method: single particle / : Liu DS, Su JY

EMDB-36038:
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state
Method: single particle / : Liu DS, Su JY

EMDB-36044:
Human pyruvate carboxylase in BCCP-CTS state without BC
Method: single particle / : Liu DS, Su JY

EMDB-41415:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody R27 targeting the CD4-binding site
Method: single particle / : Zhou T, Kwong PD, Xu J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more