[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 126 items for (author: woods & m)

EMDB-73228:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73231:
Cryo-EM map of D614G spike, 1-up-RBD
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73244:
SARS-CoV-2 D614G spike, 3-RBD-downn
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73245:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73247:
Fab-14/SARS-CoV-2 D614G spike complex, Mode V conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73260:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73263:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73265:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73267:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73270:
Fab-14/SARS-CoV-2 Omicron BA.1 spike complex
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73271:
SARS-CoV-2 Omicron BA.1 spike, 3-RBD-down
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73273:
SARS-CoV-2 Omicron BA.1 spike, 1-RBD-up
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73290:
Fab-14/SARS-CoV-2 D614G spike complex, Mode III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73291:
Unbound SARS-CoV-2 D614G spike
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73292:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73306:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ynr:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ynx:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9yok:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ypb:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ypr:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-74020:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Sibert BS, Parrell D, Yang JE, Kumar A, Larson MR, Montemayor EJ, Maindola P, Cai K, Wright ER

PDB-9zc2:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Montemayor EJ, Sibert BS, Parrell D, Yang JE, Larson MR, Gaines M, Kumar A, Maindola P, Cai K, Woods M, Wright ER

EMDB-44672:
GI.1 DS1 virus-like particle
Method: single particle / : Olia AS, Verardi R, Gorman J, Kwong PD

EMDB-44673:
Norovirus GI.1 VLP bound to 16E10 Fab
Method: single particle / : Olia AS, Kwong PD

EMDB-44734:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

PDB-9bof:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

EMDB-43792:
phi29 empty capsid lacking pentons and portal
Method: single particle / : Woodson ME, Morais MC, Seth S, Zhang W, Jardine PJ

EMDB-43793:
phi29 empty capsid maturation intermediate with wild-type pRNA
Method: single particle / : Woodson ME, Morais MC, Zhang W, Jardine PJ

EMDB-28820:
phi-29 prohead MCP gp8 penton maturation intermediate, with associated scaffold gp7 tetramer
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W, Prokhorov NS

EMDB-28821:
bacteriophage phi-29 MCP gp-8 penton in intermediate maturation state, with associated scaffold gp7 dimer
Method: single particle / : Woodson ME, Morais MC, Prokhorov NS, Zhang W, Jardine PJ

EMDB-28822:
Phi-29 scaffolding protein bound to intermediate-state MCP
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Scott SD

EMDB-28823:
Phi-29 partially-expanded fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Scott SD, Choi KH, Jardine PJ, Zhang W

EMDB-28824:
Phi-29 expanded, DNA-packaged fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W

PDB-8f2m:
Phi-29 scaffolding protein bound to intermediate-state MCP
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Scott SD

PDB-8f2n:
Phi-29 partially-expanded fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Scott SD, Choi KH, Jardine PJ, Zhang W

PDB-8f2o:
Phi-29 expanded, DNA-packaged fiberless prohead
Method: single particle / : Woodson ME, Morais MC, Jardine PJ, Zhang W

EMDB-26332:
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence
Method: single particle / : Zhou K, Luger K

EMDB-26333:
Cryo-EM structure of centromeric chromatin array shaped by the kinetochore protein CENP-N
Method: single particle / : Zhou K, Luger K

PDB-7u4d:
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence
Method: single particle / : Zhou K, Luger K

EMDB-26330:
Cryo-EM structure of CENP-A nucleosome (palindromic alpha satellite DNA) in complex with CENP-N
Method: single particle / : Zhou K, Luger K

EMDB-26331:
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and palindromic alpha satellite DNA sequence
Method: single particle / : Zhou K, Luger K

PDB-7u46:
Cryo-EM structure of CENP-A nucleosome (palindromic alpha satellite DNA) in complex with CENP-N
Method: single particle / : Zhou K, Luger K

PDB-7u47:
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and palindromic alpha satellite DNA sequence
Method: single particle / : Zhou K, Luger K

EMDB-22266:
Structure of the Lactococcus lactis Csm CTR_4:3 CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S

EMDB-22267:
Structure of the Lactococcus lactis Csm CTR_3:2 CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S

EMDB-22268:
Structure of the Lactococcus lactis Csm Apo- CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S

EMDB-22269:
Structure of the Lactococcus lactis Csm NTR CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S

PDB-6xn3:
Structure of the Lactococcus lactis Csm CTR_4:3 CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S, Li H

PDB-6xn4:
Structure of the Lactococcus lactis Csm CTR_3:2 CRISPR-Cas Complex
Method: single particle / : Rai J, Sridhara S, Li H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more