[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 335 items for (author: walker & je)

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-48093:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

EMDB-48101:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

EMDB-48102:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

EMDB-70264:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

EMDB-46788:
VFLIP Spike Trimer with 4C12-B12
Method: single particle / : Sobti M, Stewart AG

EMDB-19909:
PolII-TCR-STK19 structure.
Method: single particle / : Kokic G

PDB-9er2:
PolII-TCR-STK19 structure.
Method: single particle / : Kokic G

EMDB-50503:
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Method: single particle / : Bjoernsson KH, Walker MR, Raghavan SSR, Ward AB, Barfod LK

PDB-9fjk:
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Method: single particle / : Bjoernsson KH, Walker MR, Raghavan SSR, Ward AB, Barfod LK

EMDB-43551:
CCHFV GP38 bound with ADI-46143 and ADI-46158 Fabs
Method: single particle / : Hjorth CK, McLellan JS

EMDB-43552:
CCHFV GP38 bound with ADI-58062 and ADI-63530 Fabs
Method: single particle / : Hjorth CK, McLellan JS

EMDB-43553:
CCHFV GP38 bound with ADI-58026 and ADI-63547 Fabs
Method: single particle / : Hjorth CK, McLellan JS

EMDB-43604:
CCHFV GP38 bound to ADI-46152 and ADI-58048 Fabs
Method: single particle / : Hjorth CK, McLellan JS

PDB-8vww:
CCHFV GP38 bound to ADI-46152 and ADI-58048 Fabs
Method: single particle / : Hjorth CK, McLellan JS

EMDB-40248:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40249:
CRISPR-Cas type III-D effector complex bound to a target RNA
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40250:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40251:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40276:
CRISPR-Cas type III-D effector complex consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40296:
CRISPR-Cas type III-D effector complex local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40297:
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40298:
CRISPR-Cas type III-D effector complex bound to a target RNA consensus map
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9t:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9u:
CRISPR-Cas type III-D effector complex bound to a target RNA
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9v:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

PDB-8s9x:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-16441:
Omicron B.1.1.529 2 RBD up conformation
Method: single particle / : Raghavan SSR, Walker MR, Salanti A, Barfod LK, Wang KT

PDB-8c5r:
Omicron B.1.1.529 2 RBD up conformation
Method: single particle / : Raghavan SSR, Walker MR, Salanti A, Barfod LK, Wang KT

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

EMDB-25699:
VFLIP Spike Trimer with GAR03
Method: single particle / : Sobti M, Stewart AG

EMDB-25700:
VFLIP Spike Trimer with GAR05 FAB
Method: single particle / : Sobti M, Stewart AG, Rouet R, Langley DB

PDB-7t5o:
VFLIP Spike Trimer with GAR03
Method: single particle / : Sobti M, Stewart AG, Rouet R, Langley DB

EMDB-26653:
Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Method: single particle / : Li H, Saphire EO

EMDB-26655:
Native Lassa glycoprotein in complex with neutralizing antibodies 12.1F and 37.2D
Method: single particle / : Li H, Saphire EO

EMDB-25376:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J

PDB-7sq1:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

EMDB-26458:
Structure of lineage I (Pinneo) Lassa virus glycoprotein bound to Fab 25.10C
Method: single particle / : Buck TK, Enriquez AE, Hastie KM

EMDB-26594:
Lineage I (Pinneo) Lassa virus glycoprotein bound to 18.5C-M30 Fab
Method: single particle / : Buck TK, Enriquez AS, Hastie KM

EMDB-26195:
Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C
Method: single particle / : Enriquez AS, Hastie KM

EMDB-25574:
SARS-CoV-2 S-RBD + Fab 54042-4
Method: single particle / : Johnson NV, Mclellan JS

EMDB-26064:
SARS-CoV-2 S + Fabs 5317-4 and 5217-10
Method: single particle / : Johnson NV, McLellan JS

EMDB-12322:
1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease and priming loop ordered (Class2a)
Method: single particle / : Keown JR, Carrique L

EMDB-12323:
1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease ordered (Class2b)
Method: single particle / : Keown JR, Carrique L

EMDB-12342:
1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)
Method: single particle / : Keown JR, Carrique L

EMDB-12348:
1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)
Method: single particle / : Keown JR, Carrique L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more