[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 974 items for (author: wah & c)

EMDB-76230:
Structure of TMEM106B doublet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-76248:
Structure of TMEM106B singlet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-63297:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63331:
Consensus map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63332:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63333:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63334:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63335:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the C-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63336:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the N-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63337:
Composite map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63339:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63508:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-63509:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63510:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63511:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-65889:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lqj:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lrk:
Cryo-EM structure of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

PDB-9lrm:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lyi:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

PDB-9wdc:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-49886:
Cryo-ET map of the VZV capsid 3-fold axis.
Method: subtomogram averaging / : Oliver SL, Chen M

EMDB-49465:
Reconstruction of the intranuclear varicella-zoster virus capsid.
Method: subtomogram averaging / : Oliver SL

EMDB-49466:
Reconstruction of the varicella-zoster virus capsid vertex.
Method: subtomogram averaging / : Olver SL

EMDB-49467:
Reconstruction of the intracellular varicella-zoster virus capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49468:
VZV portal vertex cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49469:
VZV portal cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49470:
Reconstruction of intracellular varicella zoster virus CAI-capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49471:
Reconstruction of the portal vertex from intracellular varicella-zoster virus CAI-capsids.
Method: subtomogram averaging / : Oliver SL

EMDB-49472:
Reconstruction of the varicella-zoster virus C-capsid with the portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-49473:
VZV C-capsid portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-70242:
Cryo-EM structure of CLC-ec1 at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70243:
Cryo-EM structure of CLC-ec1 at pH 4.0
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70244:
Cryo-EM structure of CLC-ec1 at pH 3.0
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-70245:
Cryo-EM structure of CLC-ec1 K131A at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o95:
Cryo-EM structure of CLC-ec1 at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o96:
Cryo-EM structure of CLC-ec1 at pH 4.0
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o97:
Cryo-EM structure of CLC-ec1 at pH 3.0
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-9o98:
Cryo-EM structure of CLC-ec1 K131A at pH 7.5
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-71531:
Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS, used for comparison with Fab 5A12.WT
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-71532:
Angiopoietin-2 in complex with Fab 5A12.WT, used for comparison with Fab 5A12.6DS
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-47463:
Apo TRiC in closed conformation
Method: single particle / : Zhao Y, Chiu W

EMDB-47464:
TRiC encapsulating tubulin folding nucleus state.
Method: single particle / : Zhao Y, Chiu W

EMDB-47465:
Tubulin intermediate state I in human chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47466:
Tubulin intermediate state II in chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47467:
Tubulin intermediate III in chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47468:
Native Tubulin in human chaperonin TRIC
Method: single particle / : Zhao Y, Chiu W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more