[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 44 items for (author: trus & bl)

EMDB-16555:
Mouse serotonin 5-HT3A receptor in complex with PZ-1922
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16557:
Mouse serotonin 5-HT3A receptor in complex with PZ-1939
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-3507:
IBDV E1-1A population
Method: single particle / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3509:
IBDV E1-1B population
Method: single particle / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3510:
IBDV E1-2 population
Method: single particle / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3511:
IBDV E1 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3512:
IBDV E2 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3513:
IBDV E3 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3514:
IBDV E4 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3515:
IBDV E5 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3516:
IBDV E6 population
Method: subtomogram averaging / : Mata CP, Mertens J, Fontana J, Luque D, Allende-Ballestero C, Reguera D, Trus BL, Steven AC, Carrascosa JL, Caston JR

EMDB-3619:
RnQV1-W1118 empty capsid
Method: single particle / : Mata CP, Luque D, Gomez-Blanco J, Rodriguez JM, Suzuki N, Ghabrial SA, Carrascosa JL, Trus BL, Caston JR

PDB-5nd1:
Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus
Method: single particle / : Mata CP, Luque D, Gomez Blanco J, Rodriguez JM, Suzuki N, Ghabrial SA, Carrascosa JL, Trus BL, Caston JR

EMDB-3437:
Three-dimensional reconstruction of W1075 strain Rosellinia necatrix quadrivirus 1
Method: single particle / : Luque D, Mata CP, Gonzalez-Camacho F, Gonzalez JM, Gomez-Blanco J, Alfonso C, Rivas G, Havens WM, Kanematsu S, Suzuki N, Ghabrial SA, Trus BL, Caston JR

EMDB-3438:
Three-dimensional reconstruction of W1118 strain Rosellinia necatrix quadrivirus 1
Method: single particle / : Luque D, Mata CP, Gonzalez-Camacho F, Gonzalez JM, Gomez-Blanco J, Alfonso C, Rivas G, Havens WM, Kanematsu S, Suzuki N, Ghabrial SA, Trus BL, Caston JR

EMDB-3171:
P22 bacteriophage Empty Procapsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3172:
P22 bacteriophage GFP-loaded Procapsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3173:
P22 bacteriophage CellB-loaded Procapsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3174:
P22 bacteriophage Empty Expanded Capsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3175:
P22 bacteriophage GFP-loaded Expanded Capsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3176:
P22 bacteriophage CellB-loaded Expanded Capsid
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-3177:
Tetramer CellB fused to Cterm of P22 Scafold protein
Method: single particle / : Llauro A, Luque D, Trus BL, Edwards E, Avera J, Reguera D, Douglas T, Pablo PJ, Caston JR

EMDB-5932:
Electron cryo-microscopy of Human Papillomavirus Type 16 Capsid
Method: single particle / : Cardone G, Moyer AL, Cheng N, Thompson CD, Dvoretzky I, Lowy DR, Schiller JT, Steven AC, Buck CB, Trus BL

EMDB-5600:
Penicillium Chrysogenum Virus (PcV) capsid structure
Method: single particle / : Luque D, Gomez-Blanco J, Garriga D, Brilot A, Gonzalez JM, Havens WH, Carrascosa JL, Trus BL, Verdaguer N, Grigorieff N, Ghabrial SA, Caston JR

PDB-3j3i:
Penicillium chrysogenum virus (PcV) capsid structure
Method: single particle / : Luque D, Gomez-Blanco J, Garriga D, Brilot A, Gonzalez JM, Havens WH, Carrascosa JL, Trus BL, Verdaguer N, Grigorieff N, Ghabrial SA, Caston JR

EMDB-2106:
HRV2 empty native capsid
Method: single particle / : Pickl-Herk A, Luque D, Trus BL, Verdaguer N, Blaas D, Caston JR

EMDB-2107:
HRV2 full native capsid
Method: single particle / : Pickl-Herk A, Luque D, Trus BL, Verdaguer N, Blaas D, Caston JR

EMDB-2108:
HRV2 empty 135S particle
Method: single particle / : Pickl-Herk A, Luque D, Trus BL, Verdaguer N, Blaas D, Caston JR

EMDB-2109:
HRV2 full 135S particle
Method: single particle / : Pickl-Herk A, Luque D, Trus BL, Verdaguer N, Blaas D, Caston JR

EMDB-2062:
Cryphonectria nitschkei Virus (CnV)capsid
Method: single particle / : Gomez-Blanco J, Luque D, Gonzalez JM, Carrascosa JL, Alfonso C, Trus B, Havens WH, Ghabrial SA, Caston JR

EMDB-1933:
wt Rabbit Hemorrhagic Disease Virus (RHDV)capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

PDB-3zue:
Rabbit Hemorrhagic Disease Virus (RHDV)capsid protein
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1934:
L17 Rabbit Hemorrhagic Disease Virus (RHDV)capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1935:
L42 Rabbit Hemorrhagic Disease Virus (RHDV)capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1936:
N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1937:
N42 Rabbit Hemorrhagic Disease Virus (RHDV) T4 capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1938:
C42 Rabbit Hemorrhagic Disease Virus (RHDV) capsid
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1939:
Rabbit Hemorrhagic Disease Virus (RHDV)capsid calculated from merged wt, L17 and N42 data sets
Method: single particle / : Luque D, Gonzalez JM, Gomez-Blanco J, Marabini R, Chichon J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Barcena J, Caston JR

EMDB-1354:
Allosteric signaling and a nuclear exit strategy: binding of UL25/UL17 heterodimers to DNA-Filled HSV-1 capsids.
Method: single particle / : Trus BL, Newcomb WW, Cheng N, Cardone G, Marekov L, Homa FL, Brown JC, Steven AC

EMDB-1237:
Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch.
Method: single particle / : Luque D, Saugar I, Rodriguez JF, Verdaguer N, Garriga D, San Martin C, Velazquez-Muriel JA, Trus BL, Carrascosa JL, Caston JR

EMDB-1238:
Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch.
Method: single particle / : Luque D, Saugar I, Rodriguez JF, Verdaguer N, Garriga D, San Martin C, Velazquez-Muriel JA, Trus BL, Carrascosa JL, Caston JR

EMDB-1239:
Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch.
Method: single particle / : Luque D, Saugar I, Rodriguez JF, Verdaguer N, Garriga D, San Martin C, Velazquez-Muriel JA, Trus BL, Carrascosa JL, Caston JR

EMDB-1118:
Structural polymorphism of the major capsid protein of a double-stranded RNA virus: an amphipathic alpha helix as a molecular switch.
Method: single particle / : Saugar I, Luque D, Ona A, Rodriguez JF, Carrascosa JL, Trus BL, Caston JR

EMDB-1115:
Structural polymorphism of the major capsid protein of a double-stranded RNA virus: an amphipathic alpha helix as a molecular switch.
Method: single particle / : Saugar I, Luque D, Ona A, Rodriguez JF, Carrascosa JL, Trus BL, Caston JR

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more