[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 916 items for (author: tran & b)

EMDB-49677:
Pseudomonas aeruginosa CdrA N*-terminal domain
Method: single particle / : Fazio NT, Reichhardt C, di Trani JM, Moss E, Barrington M, Davidson C, Jaysingh AM

EMDB-49679:
Pseudomonas aeruginosa CdrA N*-terminal domain plus ~6 repeats of the extension domain
Method: single particle / : Fazio NT, Reichhardt C, di Trani JM, Moss E, Barrington M, Davidson C, Jaysingh AM

EMDB-53832:
Structure of human NHE6.1 bound to PIP2 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8n:
Structure of human NHE6.1 bound to PIP2 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53831:
Structure of human NHE6.1 bound to PIP2
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8m:
Structure of human NHE6.1 bound to PIP2
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53828:
Structure of human NHE9 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8k:
Structure of human NHE9 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8j:
Structure of human NHE9
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8l:
Structure of human NHE6.0
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-54981:
GABA-A a4b3d receptor in complex with GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

EMDB-54987:
GABA-A a4b3d receptor in complex with DS2-Me, GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

EMDB-55007:
GABA-A a4b3d receptor in complex with GABA and Nb24
Method: single particle / : Nestorow S, Miller PS

PDB-9sl1:
GABA-A a4b3d receptor in complex with GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

PDB-9sld:
GABA-A a4b3d receptor in complex with DS2-Me, GABA, Nb24 and Mb30
Method: single particle / : Nestorow S, Miller PS

PDB-9slm:
GABA-A a4b3d receptor in complex with GABA and Nb24
Method: single particle / : Nestorow S, Miller PS

EMDB-81330:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81335:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81336:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81337:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81338:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pt:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27py:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pz:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qa:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qb:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-71893:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-73816:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9pvm:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9z5i:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-54418:
Cryo-EM structure of human NHE6 in C1 symmetry
Method: single particle / : Feilen LP, Sach L, Tranchant EE, Lalic MR, Havelund JF, Brauer CM, Ginsthofer M, Ostendorf J, Ma L, Morrow EM, Faergeman NJ, Pedersen SF, Kragelund BB, Autzen HE

EMDB-54419:
Cryo-EM structure of human NHE6 in C2 symmetry
Method: single particle / : Feilen LP, Sach L, Tranchant EE, Lalic MR, Havelund JF, Brauer CM, Ginsthofer M, Ostendorf J, Ma L, Morrow EM, Faergeman NJ, Pedersen SF, Kragelund BB, Autzen HE

PDB-9s0r:
Cryo-EM structure of human NHE6 in C1 symmetry
Method: single particle / : Feilen LP, Sach L, Tranchant EE, Lalic MR, Havelund JF, Brauer CM, Ginsthofer M, Ostendorf J, Ma L, Morrow EM, Faergeman NJ, Pedersen SF, Kragelund BB, Autzen HE

PDB-9s0s:
Cryo-EM structure of human NHE6 in C2 symmetry
Method: single particle / : Feilen LP, Sach L, Tranchant EE, Lalic MR, Havelund JF, Brauer CM, Ginsthofer M, Ostendorf J, Ma L, Morrow EM, Faergeman NJ, Pedersen SF, Kragelund BB, Autzen HE

EMDB-77477:
apo-bmCCAN consensus refinement
Method: single particle / : Yatskevich S, Ciferri C

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70561:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70567:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

PDB-9oke:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okk:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

EMDB-55878:
Cryo-EM structure of the inward rectifying potassium channel 7.1 (Kir7.1)
Method: single particle / : O'Malley N, Faust B, Nasrallah C, Wallace BA

EMDB-55889:
Cryo-EM structure of the R162W mutant inward rectifying potassium channel 7.1 (Kir7.1)
Method: single particle / : O'Malley N, Faust B, Nasrallah C, Wallace BA

EMDB-55892:
Cryo-EM structure of the inward rectifying potassium channel 7.1 (Kir7.1) in complex with PIP2
Method: single particle / : O'Malley N, Faust B, Nasrallah C, Wallace BA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more