[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,308 items for (author: tong & j)

EMDB-38099:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy

EMDB-38100:
Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy

EMDB-38101:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)

EMDB-38102:
Cryo-EM map of RNF168/UbcH5c-Ub/nucleosome determined by E2-Ub-NCP conjugation strategy

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab

PDB-9bew:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs

PDB-9bf6:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab

EMDB-38873:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

EMDB-38874:
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

EMDB-38875:
Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

EMDB-38876:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

PDB-8y36:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

PDB-8y37:
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

PDB-8y38:
Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

PDB-8y39:
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

EMDB-43046:
Full length integrin AlphaIIbBeta3 in pre-active state

EMDB-32979:
Cryo-EM structure of Coxsackievirus B1 A-particle in complex with nAb 8A10 (CVB1-A:8A10)

PDB-7x35:
Cryo-EM structure of Coxsackievirus B1 A-particle in complex with nAb 8A10 (CVB1-A:8A10)

EMDB-38617:
SARS-CoV-2 RBD + IMCAS-123 + IMCAS-72 Fab

EMDB-38618:
SARS-CoV-2 RBD + IMCAS-364 + hACE2

EMDB-38619:
SARS-CoV-2 RBD + IMCAS-364 (Local Refinement)

EMDB-38620:
SARS-CoV-2 Omicron BA.4 RBD + IMCAS-316 + ACE2

EMDB-38621:
SARS-CoV-2 spike + IMCAS-123

EMDB-38823:
Cryo-EM structure of the 123-316 scDb/PT-RBD complex

PDB-8xse:
SARS-CoV-2 RBD + IMCAS-123 + IMCAS-72 Fab

PDB-8xsf:
SARS-CoV-2 RBD + IMCAS-364 + hACE2

PDB-8xsi:
SARS-CoV-2 RBD + IMCAS-364 (Local Refinement)

PDB-8xsj:
SARS-CoV-2 Omicron BA.4 RBD + IMCAS-316 + ACE2

PDB-8xsl:
SARS-CoV-2 spike + IMCAS-123

PDB-8y0y:
Cryo-EM structure of the 123-316 scDb/PT-RBD complex

EMDB-38860:
structure of RSF-147bp NCP complex Class 0

EMDB-38861:
Structure of RSF-147bpNCP complex class 2

EMDB-38865:
RSF-38N38NCP complex Class 2

EMDB-37895:
PNPase mutant of Mycobacterium tuberculosis

EMDB-37896:
PNPase of M.tuberculosis with its RNA substrate

EMDB-37905:
PNPase of Mycobacterium tuberculosis

PDB-8wwp:
PNPase mutant of Mycobacterium tuberculosis

PDB-8wx0:
PNPase of M.tuberculosis with its RNA substrate

PDB-8wxf:
PNPase of Mycobacterium tuberculosis

EMDB-35116:
Cryo-EM structure of 6-subunit Smc5/6

EMDB-35128:
Cryo-EM structure of 6-subunit Smc5/6 arm region

EMDB-35184:
Cryo-EM structure of 5-subunit Smc5/6 hinge region

EMDB-35185:
Cryo-EM structure of 5-subunit Smc5/6 arm region

EMDB-35186:
Cryo-EM structure of 5-subunit Smc5/6 head region

EMDB-35187:
Cryo-EM structure of 5-subunit Smc5/6

EMDB-37584:
Cryo-EM structure of 6-subunit Smc5/6 hinge region

EMDB-37586:
Cryo-EM structure of 6-subunit Smc5/6 head region

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more