[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 407 items for (author: thoms & m)

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-71132:
Consensus refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71133:
Focused refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-75112:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75120:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75121:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75122:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75123:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75127:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75128:
OX1-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75129:
SK5A-Matured glycine/glutamate in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75134:
SK5G-Germline
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75136:
SK5A-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75138:
SK5B-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10en:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ev:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ex:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ey:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ez:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fd:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fe:
OX1-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10ff:
SK5A-Matured glycine/glutamate in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fl:
SK5G-Germline
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fn:
SK5A-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

PDB-10fo:
SK5B-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-71134:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

PDB-9p1u:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-48251:
Consensus refinement of the barrel region of beta-barrel assembly machine from Escherichia coli in an late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48252:
Focused refinement of the barrel region of beta-barrel assembly machine from Escherichia coli in an late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48253:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48254:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48255:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mge:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgf:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgg:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-53279:
Cryo_EM density map of human FAN1 in complex with CAG-2 loop DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Thomsen M

EMDB-50647:
Stalled 90S - Utp23-Krr1-deltaC3 - Consensus refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50648:
Stalled 90S - Utp23-Krr1-deltaC3 - Head-Kre33 module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50649:
Stalled 90S - Utp23-Krr1-deltaC3 - Krr1 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50650:
Stalled 90S - Utp23-Krr1-deltaC3 - Nop14 module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50651:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp10 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50652:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp12 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50653:
Stalled 90S - Utp23-Krr1-deltaC3 - Utp20 - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50654:
Stalled 90S - Utp23-Krr1-deltaC3 - UTP-A - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50958:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - 3' HACA - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50959:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - 5' HACA - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50960:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - Platform module - local refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

EMDB-50961:
snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3 - Consensus refinement
Method: single particle / : Thoms M, Berninghausen O, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more