[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,564 items for (author: thomas & dr)


EMDB Unreleased entry

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C


EMDB Unreleased entry

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-48850:
CryoEM structure of WNV (Kunjin strain) with the Fab of WNV-86 antibody
Method: single particle / : Khare B, Klose T

PDB-9n3b:
CryoEM structure of WNV (Kunjin strain) with the Fab of WNV-86 antibody
Method: single particle / : Khare B, Klose T

EMDB-55568:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with SecYEG (Consensus Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-55570:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with SecYEG-YidC (Consensus Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-55571:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with SecYEG-YidC (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-54627:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

EMDB-54956:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

PDB-9s6p:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

PDB-9sk3:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

EMDB-55598:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

PDB-9t5x:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vue:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vuf:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

PDB-9vug:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-53892:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53893:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53894:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC (Composite map)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

PDB-9rbf:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-53560:
Structure of a stalled E. coli 70S RNC-NuoK-48 in complex with the SecYEG Translocon.
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53568:
Structure of a stalled E. coli 70S RNC-NuoK-48 in complex with the SecYEG Translocon (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53584:
Structure of a stalled E. coli 70S RNC-NuoK-86-E36K-E76K-mutant in complex with the SecYEG-YidC membrane protein insertase
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53585:
Structure of a stalled E. coli 70S RNC-NuoK-86-E36K-E76K-mutant in complex with the SecYEG-YidC membrane protein insertase (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53587:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the SecYEG-YidC membrane protein insertase
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-53589:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the SecYEG-YidC membrane protein insertase (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-75296:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75297:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75298:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-75299:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

PDB-10my:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10mz:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10na:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10nb:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-53970:
pre-Initiation Complex on ARS1 DNA (monomer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

EMDB-53971:
Pre-Initiation Complex on ARS1 DNA (dimer)
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-53972:
Phospho-DH bound by Sld3-MBD on ARS1 DNA
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-53973:
Phospho-MCM double hexamer bound to Sld3-Sld7-Cdc45 on ARS1 DNA
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-56897:
sCMGE assembled on ARS1 DNA with RPA and no Sld2
Method: single particle / : Puehringer T, Palm G, Costa A

EMDB-56898:
sCMGE assembled on ARS1 DNA with Sld2 and RPA
Method: single particle / : Palm G, Costa A

PDB-28vy:
sCMGE assembled on ARS1 DNA with Sld2 and RPA
Method: single particle / : Butryn A, Palm G, Costa A

PDB-9rhi:
pre-Initiation Complex on ARS1 DNA (monomer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

PDB-9rhj:
Pre-Initiation Complex on ARS1 DNA (dimer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more