[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 71 items for (author: tajima & n)

EMDB-45237:
Structure of the amino-terminal domain of kainate receptor GluK2 in the apo state
Method: single particle / : Changping Z, Nami T

EMDB-45238:
Structure of Ligand binding and transmembrane domains of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T

EMDB-45239:
CryoEM structure of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T

EMDB-45410:
Structure of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T, Guadalupe S

PDB-9c5y:
Structure of the amino-terminal domain of kainate receptor GluK2 in the apo state
Method: single particle / : Changping Z, Nami T

PDB-9c5z:
Structure of Ligand binding and transmembrane domains of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T

PDB-9c60:
CryoEM structure of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T

PDB-9caz:
Structure of kainate receptor Gluk2 in apo state
Method: single particle / : Changping Z, Nami T, Guadalupe S

EMDB-61204:
Cryo-EM Structure of calcium sensing receptor in complex gamma-glutamyl-valyl-glycine as a kokumi substance
Method: single particle / : Yamaguchi H, Kitajima S, Suzuki H, Suzuki S, Nishikawa K, Maruyama Y, Kamegawa A, Kazutoshi T, Tagami U, Kuroda M, Fujiyoshi Y, Sugiki M

PDB-9j7i:
Cryo-EM Structure of calcium sensing receptor in complex gamma-glutamyl-valyl-glycine as a kokumi substance
Method: single particle / : Yamaguchi H, Kitajima S, Suzuki H, Suzuki S, Nishikawa K, Maruyama Y, Kamegawa A, Kazutoshi T, Tagami U, Kuroda M, Fujiyoshi Y, Sugiki M

EMDB-29929:
Domoate-bound GluK2 kainate receptors in non-active conformation
Method: single particle / : Bogdanovic N, Tajima N

PDB-8gc5:
Domoate-bound GluK2 kainate receptors in non-active conformation
Method: single particle / : Bogdanovic N, Tajima N

EMDB-29926:
Domoate-bound GluK2 kainate receptor in partially-open conformation 1
Method: single particle / : Bogdanovic N, Tajima N

EMDB-29927:
Domote-bound GluK2 kainate receptors in partially-open conformation 2
Method: single particle / : Bogdanovic N, Tajima N

EMDB-29928:
Domoate-bound GluK2 kainate receptor in partially-open conformation 3
Method: single particle / : Bogdanovic N, Tajima N

PDB-8gc2:
Domoate-bound GluK2 kainate receptor in partially-open conformation 1
Method: single particle / : Bogdanovic N, Tajima N

PDB-8gc3:
Domote-bound GluK2 kainate receptors in partially-open conformation 2
Method: single particle / : Bogdanovic N, Tajima N

PDB-8gc4:
Domoate-bound GluK2 kainate receptor in partially-open conformation 3
Method: single particle / : Bogdanovic N, Tajima N

EMDB-28775:
cryo-EM structure of homomeric kainate receptor GluK2 in resting (apo) state
Method: single particle / : Bogdanovic N, Tajima N

PDB-8f0o:
cryo-EM structure of homomeric kainate receptor GluK2 in resting (apo) state
Method: single particle / : Bogdanovic N, Tajima N

EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h86:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h87:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8iu0:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-33045:
SARS-CoV-2 spike glycoprotein in complex with neutralizing antibody UT28K
Method: single particle / : Ozawa T, Tani H, Anraku Y, Kita S, Igarashi E, Saga Y, Inasaki N, Kawasuji H, Yamada H, Sasaki S, Someoka M, Sasaki J, Hayakawa Y, Yamamoto Y, Morinaga Y, Kurosawa N, Isobe M, Fukuhara H, Maenaka K, Hashiguchi T, Kishi H, Kitajima I, Saito S, Niimi H

EMDB-25843:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 class1
Method: single particle / : Tajima N, Furukawa H

EMDB-25844:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 non-active1-like
Method: single particle / : Tajima N, Furukawa H

EMDB-25845:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 Non-active2-like
Method: single particle / : Tajima N, Furukawa H

EMDB-25849:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 active conformation
Method: single particle / : Tajima N, Furukawa H

EMDB-25850:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 non-active2 conformation
Method: single particle / : Tajima N, Furukawa H

EMDB-25851:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in Non-active1 conformation
Method: single particle / : Tajima N, Furukawa H

EMDB-25852:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in non-active2-like conformation
Method: single particle / : Tajima N, Furukawa H

PDB-7te9:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 class1
Method: single particle / : Tajima N, Furukawa H

PDB-7teb:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 non-active1-like
Method: single particle / : Tajima N, Furukawa H

PDB-7tee:
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 Non-active2-like
Method: single particle / : Tajima N, Furukawa H

PDB-7teq:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 active conformation
Method: single particle / : Tajima N, Furukawa H

PDB-7ter:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 non-active2 conformation
Method: single particle / : Tajima N, Furukawa H

PDB-7tes:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in Non-active1 conformation
Method: single particle / : Tajima N, Furukawa H

PDB-7tet:
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in non-active2-like conformation
Method: single particle / : Tajima N, Furukawa H

EMDB-21673:
GluN1b-GluN2B NMDA receptor in non-active 2 conformation at 4 angstrom resolution
Method: single particle / : Chou T, Tajima N

EMDB-21674:
GluN1b-GluN2B NMDA receptor in non-active 1 conformation at 3.95 angstrom resolution
Method: single particle / : Chou T, Tajima N

EMDB-21675:
GluN1b-GluN2B NMDA receptor in active conformation at 4.4 angstrom resolution
Method: single particle / : Chou T, Tajima N

EMDB-21676:
GluN1b-GluN2B NMDA receptor in complex with SDZ 220-040 and L689,560, class 1
Method: single particle / : Chou T, Tajima N

EMDB-21677:
GluN1b-GluN2B NMDA receptor in complex with SDZ 220-040 and L689,560, class 2
Method: single particle / : Chou T, Tajima N

PDB-6whr:
GluN1b-GluN2B NMDA receptor in non-active 2 conformation at 4 angstrom resolution
Method: single particle / : Chou T, Tajima N, Furukawa H

PDB-6whs:
GluN1b-GluN2B NMDA receptor in non-active 1 conformation at 3.95 angstrom resolution
Method: single particle / : Chou T, Tajima N, Furukawa H

PDB-6wht:
GluN1b-GluN2B NMDA receptor in active conformation at 4.4 angstrom resolution
Method: single particle / : Chou T, Tajima N, Furukawa H

PDB-6whu:
GluN1b-GluN2B NMDA receptor in complex with SDZ 220-040 and L689,560, class 1
Method: single particle / : Chou T, Tajima N, Furukawa H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more