[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 230 items for (author: spence & j)

EMDB-49948:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

EMDB-72383:
Cryo-EM structure of human VCP/p97-R89W mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72384:
Cryo-EM structure of human VCP/p97-R89W mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72385:
Cryo-EM structure of human VCP/p97-R89W mutant bound to CB-5083
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72386:
Cryo-EM structure of human VCP/p97-T122P mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72387:
Cryo-EM structure of human VCP/p97-T122P mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72388:
Cryo-EM structure of human VCP/p97-G128D mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72389:
Cryo-EM structure of human VCP/p97-G128D mutant bound to ATPgS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72390:
Cryo-EM structure of human VCP/p97-G156D mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-72391:
Cryo-EM structure of human VCP/p97-G156D mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y03:
Cryo-EM structure of human VCP/p97-R89W mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y04:
Cryo-EM structure of human VCP/p97-R89W mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y05:
Cryo-EM structure of human VCP/p97-R89W mutant bound to CB-5083
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y06:
Cryo-EM structure of human VCP/p97-T122P mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y07:
Cryo-EM structure of human VCP/p97-T122P mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y08:
Cryo-EM structure of human VCP/p97-G128D mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y09:
Cryo-EM structure of human VCP/p97-G128D mutant bound to ATPgS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y0b:
Cryo-EM structure of human VCP/p97-G156D mutant bound to ADP
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

PDB-9y0c:
Cryo-EM structure of human VCP/p97-G156D mutant bound to ATPgammaS
Method: single particle / : Lehman A, Ahmed S, Mohajeri A, Yang GX, Berezuk AM, Mannar D, Cholak S, Tuttle KS, Bennett JT, Magno JA, Hannibal M, Kovacevic G, Kuburovic V, Lewis MES, Moldovan O, Nelson Z, Raskin S, Vandersteen AM, Roach JC, Subramaniam S, Patel MS

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-70507:
HCoV-229E S2P bound by one DH1533 Fab, consensus map
Method: single particle / : Wrapp D

EMDB-70508:
HCoV-229E S2P bound by one DH1533 Fab, focused map
Method: single particle / : Wrapp D

EMDB-70557:
Cardiac lambda-6 light chain amyloid AL-224L single protofilament
Method: helical / : Hicks CW, Gursky O, Huda N

PDB-9oka:
Cardiac lambda-6 light chain amyloid AL-224L single protofilament
Method: helical / : Hicks CW, Gursky O, Huda N

EMDB-70440:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70441:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70442:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

PDB-9ofo:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

PDB-9ofp:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

PDB-9ofq:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-61842:
CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 3
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen X, Zhang T, He J, Xiong X

EMDB-61847:
CryoEM structure of M. tuberculosis ClpP1P2 bound to bortezomib
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen W, Zhang T, He J, Xiong X

PDB-9jvp:
CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 3
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen X, Zhang T, He J, Xiong X

PDB-9jvz:
CryoEM structure of M. tuberculosis ClpP1P2 bound to bortezomib
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen W, Zhang T, He J, Xiong X

EMDB-39157:
CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 2
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen X, Zhang T, He J, Xiong X

EMDB-39161:
CryoEM structure of M. tuberculosis ClpXP1P2 complex bound to bortezomib
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen X, Zhang T, He J, Xiong X

EMDB-39162:
CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 1
Method: single particle / : Zhou B, Zhao H, Gao Y, Chen X, Zhang T, He J, Xiong X

EMDB-39163:
CryoEM structure of M. tuberculosis ClpP1P2 bound to bortezomib
Method: single particle / : Zhou B, Gao Y, Zhao H, Chen W, He J, Zhang T, Xiong X

EMDB-48423:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

EMDB-48535:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

PDB-9mnh:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

PDB-9mqn:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

EMDB-39164:
CryoEM structure of apo M. tuberculosis ClpP1P2
Method: single particle / : Zhou B, Gao Y, Zhao H, Chen X, He J, Zhang T, Xiong X

EMDB-19627:
Cryo-EM structure of CAK modified by covalent inhibitor SY-1365
Method: single particle / : Feng J, Koh AF, Kotecha A, Greber BJ

EMDB-19628:
Cryo-EM structure of CAK in complex with SY-5609
Method: single particle / : Feng J, Cronin NB, Marineau JJ, Greber BJ

PDB-8s0r:
Cryo-EM structure of CAK modified by covalent inhibitor SY-1365
Method: single particle / : Feng J, Koh AF, Kotecha A, Greber BJ

PDB-8s0t:
Cryo-EM structure of CAK in complex with SY-5609
Method: single particle / : Feng J, Cronin NB, Marineau JJ, Greber BJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more