[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 745 items for (author: singh & v)

EMDB-52047:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcf:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-52044:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, State A1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52046:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3 dimer and the MALSU-L0R8F8-mt-ACP complex, State A3 (SAMC knock out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52048:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
Method: single particle / : Singh V, Glasgow R, Amunts A, Freyer C, Wredenberg A

EMDB-52049:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7 and the MALSU1-L0R8F8-mt-ACP complex, State C1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcc:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, State A1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hce:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3 dimer and the MALSU-L0R8F8-mt-ACP complex, State A3 (SAMC knock out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcg:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
Method: single particle / : Singh V, Freyer C, Amunts A, Wredenberg A

PDB-9hch:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7 and the MALSU1-L0R8F8-mt-ACP complex, State C1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52408:
Mouse mitochondrial large subunit assembly intermediate in complex with MRM2 dimer with uL16m bound (SAMC Knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Wredenberg A

EMDB-52430:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, MTERF4 and the MALSU1-L0R8F8-mtACP complex, State C2 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow R, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52045:
Mouse mitoribosome large subunit assembly intermediate (with uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, state A2 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcd:
Mouse mitoribosome large subunit assembly intermediate (with uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, state A2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-47930:
Cryo-EM structure of the human KCa3.1/calmodulin channel in complex with Ca2+ and 1,4-dihydropyridine (DHP-103)
Method: single particle / : Nam YW, Zhang M

PDB-9ed1:
Cryo-EM structure of the human KCa3.1/calmodulin channel in complex with Ca2+ and 1,4-dihydropyridine (DHP-103)
Method: single particle / : Nam YW, Zhang M

EMDB-52431:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

PDB-9hvc:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

EMDB-44229:
Cryo-EM structure of the LAPTH-bound PTH1R in complex with Gq
Method: single particle / : Zhang X, Liu H, Zhang C, Vilardaga JP

PDB-9b5y:
Cryo-EM structure of the LAPTH-bound PTH1R in complex with Gq
Method: single particle / : Zhang X, Liu H, Zhang C, Vilardaga JP

EMDB-48870:
C-ring Consensus map, 34-mer CCW flagellar switch complex - FliF, FliG, FliM, and FliN from Salmonella
Method: single particle / : Singh PK, Iverson TM

EMDB-48916:
CCW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming 34-mer C-ring from Salmonella
Method: single particle / : Singh PK, Iverson TM

PDB-9n4z:
CCW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming 34-mer C-ring from Salmonella
Method: single particle / : Singh PK, Iverson TM

EMDB-48830:
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Method: single particle / : Welfer GA, Brady RA, Natchiar SK, Watson ZL, Rundlet EJ, Alejo JL, Singh AP, Mishra NK, Altman RB, Blanchard SC

EMDB-48831:
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
Method: single particle / : Welfer GA, Brady RA, Natchiar SK, Watson ZL, Rundlet EJ, Alejo JL, Singh AP, Mishra NK, Altman RB, Blanchard SC

PDB-9n2b:
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Method: single particle / : Welfer GA, Brady RA, Natchiar SK, Watson ZL, Rundlet EJ, Alejo JL, Singh AP, Mishra NK, Altman RB, Blanchard SC

PDB-9n2c:
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
Method: single particle / : Welfer GA, Brady RA, Natchiar SK, Watson ZL, Rundlet EJ, Alejo JL, Singh AP, Mishra NK, Altman RB, Blanchard SC

EMDB-19460:
Human mitochondrial ribosome in complex with antibiotic tigecycline
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

PDB-8rri:
Human mitochondrial ribosome in complex with antibiotic tigecycline
Method: single particle / : Khawaja A, Sing V, Nguyen MD, Rorbach J

EMDB-48871:
C-ring - single subunit of the 34-mer CCW flagellar switch complex - FliF, FliG, FliM, and FliN from Salmonella
Method: single particle / : Singh PK, Iverson TM

PDB-9n49:
C-ring - single subunit of the 34-mer CCW flagellar switch complex - FliF, FliG, FliM, and FliN from Salmonella
Method: single particle / : Singh PK, Iverson TM

EMDB-45039:
Cryo-EM structure of amyloid fibril extracted from nerve of a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

EMDB-45074:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

PDB-9byn:
Cryo-EM structure of amyloid fibril extracted from nerve of a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

PDB-9bzs:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR V30M amyloidosis patient
Method: helical / : Nguyen AB, Afrin S, Yakubovska A, Saelices L

EMDB-45443:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Jaiswal D

EMDB-45444:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Civljak A

PDB-9cci:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Jaiswal D

PDB-9ccj:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Civljak A

PDB-9d5c:
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Method: helical / : Balana JA, Nguyen AB, Sawaya M, Murzin AG, Saelices L, Pratt RM

EMDB-44062:
SARS CoV-2 Spike protein Ectodomain with internal tag, all RBD-down conformation
Method: single particle / : Singh S, Hasan SS

EMDB-44116:
SARS CoV-2 Spike protein Ectodomain with internal tag, 1RBD-up conformation
Method: single particle / : Singh S, Hasan SS

EMDB-45893:
Cryo-EM structure of SARS-CoV-2 spike protein Ecto-domain with internal tag, 1UP RBD conformation
Method: single particle / : Singh S, Hasan SS

EMDB-45895:
Cryo-EM structure of SARS-CoV-2 spike protein Ecto-domain with internal tag, All RBD down conformation, State-3
Method: single particle / : Singh S, Hasan SS

EMDB-45965:
Cryo-EM structure of SARS-CoV-2 spike protein Ecto-domain with internal tag, 1RBD UP, State-2
Method: single particle / : Singh S, Hasan SS

EMDB-45987:
SARS CoV-2 Spike protein Ectodomain with internal tag, all RBD-down conformation -C1
Method: single particle / : Singh S, Hasan SS

EMDB-48839:
Cryo-EM structure of locally refined up conformation of SARS-CoV-2 spike protein Receptor Binding Domain
Method: single particle / : Singh S, Hasan SS

PDB-9b0y:
SARS CoV-2 Spike protein Ectodomain with internal tag, all RBD-down conformation
Method: single particle / : Singh S, Hasan SS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more