[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,040 items for (author: singh & v)

PDB-9ror:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rot:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rov:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rpf:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-72052:
Consensus map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-72055:
Multi-body LSU map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-72069:
Multi-body SSU body map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-vargas C, Leger-Abraham M

EMDB-72070:
Multi-body SSU head map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

PDB-9ygm:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

PDB-9yxb:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

EMDB-72933:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

EMDB-73574:
Consensus map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73576:
Multi-body LSU map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73577:
Multi-body SSU body map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73581:
Multi-body SSU head map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73602:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

EMDB-77042:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77043:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77047:
Apoferritin with crossed laser phase plate (xLPP), xLPP-off, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-73380:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-73612:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9ys3:
Pr-pr homodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

PDB-9yxn:
Pr-Pfr heterodimer state of Stigmatella aurantiaca bacteriophytochrome 2
Method: single particle / : Karki P, Stojkovic EA, Schmidt M

EMDB-74618:
cryoEM structure of hexametric HtrA from Borrelia burgdorferi with bound peptides in the active sites
Method: single particle / : Shakya AK, Herzberg O

PDB-9zrj:
cryoEM structure of hexametric HtrA from Borrelia burgdorferi with bound peptides in the active sites
Method: single particle / : Shakya AK, Herzberg O

EMDB-71994:
Cryo-EM structure of NapA, the periplasmic nitrate reductase from Campylobacter jejuni
Method: single particle / : Thach T, Subramanian R

PDB-9pxt:
Cryo-EM structure of NapA, the periplasmic nitrate reductase from Campylobacter jejuni
Method: single particle / : Thach T, Subramanian R

EMDB-72972:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yhs:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72970:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72971:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72973:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72985:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72986:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72987:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72988:
NN39-171 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72989:
V634-136 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72990:
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72991:
V645-158 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72992:
HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72993:
HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72994:
HIV-1 Env del8-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yho:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhq:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhr:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yht:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yib:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yid:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yie:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more