[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,232 items for (author: shi & ss)

EMDB-73688:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

PDB-9z03:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

EMDB-56343:
Cryo-EM structure of human VPS34-CI in complex with GABARAP - alternative conformation, local refinement on BECLIN1 and ATG14L C-terminal domains.
Method: single particle / : Dessus AN, Williams RL

EMDB-56345:
Cryo-EM structure of human VPS34-CI in complex with GABARAP - alternative conformation, consensus map
Method: single particle / : Dessus AN, Williams RL

EMDB-56346:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, consensus map
Method: single particle / : Dessus AN, Williams RL

EMDB-56347:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, local refinement on VPS34 and VPS15 kinase domains.
Method: single particle / : Dessus AN, Williams RL

EMDB-56348:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, local refinement on the core of VPS34-CI.
Method: single particle / : Dessus AN, Williams RL

EMDB-56350:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, local refinement on VPS15 helical solenoid, and BECLIN1 and ATG14L N-terminal domains.
Method: single particle / : Dessus AN, Williams RL

EMDB-56351:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, local refinement on GABARAP.
Method: single particle / : Dessus AN, Williams RL

EMDB-56353:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, local refinement on BECLIN1 and ATG14L C-terminal domains.
Method: single particle / : Dessus AN, Williams RL

EMDB-56357:
Cryo-EM structure of human VPS34-CI in complex with GABARAP, composite map
Method: single particle / : Dessus AN, Williams RL

EMDB-56358:
Cryo-EM structure of human VPS34-CI in complex with GABARAP - alternative conformation, composite map
Method: single particle / : Dessus AN, Williams RL

EMDB-56454:
Cryo-EM structure of human VPS34-CI with ADP:MgF3 - consensus map
Method: single particle / : Dessus AN, Williams RL

EMDB-56455:
Cryo-EM structure of human VPS34-CI with ADP:MgF3 - local refinement on the complex base
Method: single particle / : Dessus AN, Williams RL

EMDB-56456:
Cryo-EM structure of human VPS34-CI with ADP:MgF3 - local refinement on VPS34 and VPS15 kinases
Method: single particle / : Dessus AN, Williams RL

EMDB-56457:
Cryo-EM structure of human VPS34-CI with ADP:MgF3 - local refinement on ATG14L and BECLIN1 C-termini
Method: single particle / : Dessus AN, Williams RL

EMDB-56458:
Cryo-EM structure of human VPS34-CI with ADP:MgF3 - composite map
Method: single particle / : Dessus AN, Williams RL

EMDB-71835:
Alpha-synuclein acetylated lysine 80
Method: helical / : Li MH

EMDB-71836:
Alpha-synuclein B
Method: helical / : Li MH

EMDB-71837:
Alpha-synuclein A
Method: helical / : Li MH

EMDB-71838:
Alpha-synuclein acetylated lysine 80 B
Method: helical / : Li MH

EMDB-71839:
Alpha-synuclein acetylated lysine 80 A
Method: helical / : Li MH

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-54307:
VPS34-CI bound to NRBF2 and RAB1A, focused refinement on the kinase arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54308:
VPS34-CI bound to NRBF2 and RAB1A, focused refinement on the adaptor arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54309:
VPS34-CI bound to NRBF2 and RAB1A, focused refinement on the interface between RAB1A and VPS34
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54310:
VPS34-CI bound to NRBF2 and RAB1A, consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54311:
VPS34-CI bound to NRBF2 and RAB1A; composite unsharpened map
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54323:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79), focused refinement on the VPS34 kinase domain and VPS15 pseudokinase domain
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54324:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79), focused refinement on the VPS15 WD40 domain, BECLIN1 BARA domain, and ATG14L CTD
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54325:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79, focused refinement on the VPS15 helical solenoid, and ATG14L/BECLIN1 CC1 and N-terminal domains
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54326:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79), consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54357:
VPS34-CI bound to NRBF2 and RAB1A, primary composite map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54360:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79), unsharpened composite EM map
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx4:
VPS34-CI bound to NRBF2 and RAB1A
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx7:
VPS34-CI bound to NRBF2 MIT domain (residues 1-79)
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-73644:
AI-generated RNA-guided nuclease TAM-bound state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

EMDB-73645:
AI-generated RNA-guided nuclease R-loop formed state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

PDB-9yyg:
AI-generated RNA-guided nuclease TAM-bound state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

PDB-9yyh:
AI-generated RNA-guided nuclease R-loop formed state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more