[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 10,865 items for (author: shi & d)

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72970:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72971:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72973:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72985:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72986:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72987:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72988:
NN39-171 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72989:
V634-136 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72990:
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72991:
V645-158 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72992:
HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72993:
HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72994:
HIV-1 Env del8-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yho:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhq:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yhr:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yht:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yib:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yid:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yie:
NN39-25 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yif:
NN39-171 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yig:
V634-136 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yih:
V634-136 UCA Fab in complex with HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yii:
V645-158 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yij:
HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yik:
HIV-1 Env del4-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

PDB-9yil:
HIV-1 Env del8-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-64861:
Cryo-EM structure of the ArlB filament of Haloarcula marismortui
Method: single particle / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

EMDB-64862:
Cryo-EM structure of the inner core of ArlA2 filament of Haloarcula marismortui
Method: single particle / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

EMDB-67194:
Cryo-EM structure of ArlA2 filament of Haloarcula marismortui
Method: helical / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

PDB-9v95:
Cryo-EM structure of the ArlB filament of Haloarcula marismortui
Method: single particle / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

PDB-9v96:
Cryo-EM structure of the inner core of ArlA2 filament of Haloarcula marismortui
Method: single particle / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

PDB-9xtb:
Cryo-EM structure of ArlA2 filament of Haloarcula marismortui
Method: helical / : Meshcheryakov VA, Hyun J, Syutkin AS, Pyatibratov MG, Wolf M

EMDB-75574:
gRNAde designed RNA molecule
Method: single particle / : Spellmon N, Haack DB, Joshi CK, Hingey J, Rudolfs B, Mancino A, Toor N, Yu Z, Das R

EMDB-75575:
MPNN-fixbb designed RNA molecule
Method: single particle / : Haack DB, Spellmon N, Favor AH, Kubaney A, Baker D, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

EMDB-75584:
MPNN-RFdiff designed RNA molecule
Method: single particle / : Hingey J, Spellmon N, Favor AH, Kubaney A, Baker D, Haack DB, Rudolfs B, Mancino A, Yu Z, Toor N, Das R

PDB-10zt:
gRNAde designed RNA molecule
Method: single particle / : Spellmon N, Haack DB, Joshi CK, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

EMDB-75648:
Struct2SeQ designed RNA molecule
Method: single particle / : Mancino A, Hingey J, He S, Haack DB, Rudolfs B, Spellmon N, Yu Z, Toor N, Das R

EMDB-72206:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab4 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

PDB-9q3s:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab4 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

EMDB-53783:
HD6 defensin filament with IP6
Method: single particle / : Kamyshinsky R, Fass D, Elad N

EMDB-53784:
HD6 defensin filament with IP6
Method: single particle / : Kamyshinsky R, Fass D, Elad N

EMDB-53785:
HD6 defensin filament with phosphate (CASP target)
Method: single particle / : Kamyshinsky R, Fass D, Khmelnitsky L, Kalepu R, Elad N

PDB-9r7l:
HD6 defensin filament with IP6
Method: single particle / : Kamyshinsky R, Fass D, Elad N

PDB-9r7m:
HD6 defensin filament with IP6
Method: single particle / : Kamyshinsky R, Fass D, Elad N

PDB-9r7n:
HD6 defensin filament with phosphate
Method: single particle / : Kamyshinsky R, Fass D, Khmelnitsky L, Kalepu R, Elad N

EMDB-51873:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9h51:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-72094:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab76 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more