[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 88 items for (author: schulten & k)

EMDB-10050:
Structure of the E. coli Chemotaxis Core Signaling Unit
Method: subtomogram averaging / : Zhang P

PDB-6s1k:
E. coli Core Signaling Unit, carrying QQQQ receptor mutation
Method: subtomogram averaging / : Cassidy CK

EMDB-10160:
In Situ Core-Signalling Unit of E. coli Chemoreceptor Array
Method: subtomogram averaging / : Burt A, Desfosses A, Gutsche I

EMDB-4991:
Escherichia coli chemotaxis signaling arrays at low kinase activity with serine receptor mutant Tsr_EEEE
Method: subtomogram averaging / : Yang W, Cassidy CK, Ames P, Diebolder CA, Schulten K, Luthey-Schulten Z, Parkinson JS, Briegel A

EMDB-4992:
Escherichia coli chemotaxis signaling arrays at high kinase activity with serine receptor mutant Tsr_QQQQ
Method: subtomogram averaging / : Yang W, Cassidy CK, Ames P, Diebolder CA, Schulten K, Luthey-Schulten Z, Parkinson JS, Briegel A

EMDB-4993:
Escherichia coli chemotaxis signaling arrays with wild-type serine receptor Tsr_QEQE
Method: subtomogram averaging / : Yang W, Cassidy CK, Ames P, Diebolder CA, Schulten K, Luthey-Schulten Z, Parkinson JS, Briegel A

EMDB-8577:
CryoEM structure of the helical assembly of full length MxB
Method: helical / : Alvarez FJD, He S, Scheres SHW, Zhang P

PDB-5uot:
CryoEM structure of the helical assembly of full length MxB
Method: helical / : Perilla JR, Alvarez FJD, Zhang P, Schulten K

EMDB-8582:
Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM
Method: helical / : Zhang P, Randall S

PDB-5up4:
Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM
Method: helical / : Perilla JR, Schirra R, Zhang P, Schulten K

EMDB-3534:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T

EMDB-3535:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T

EMDB-3536:
26S proteasome in presence of AMP-PNP (s3)
Method: single particle / : Wehmer M, Rudack T

EMDB-3537:
26S proteasome in presence of BeFx (s4)
Method: single particle / : Wehmer M, Rudack T

PDB-5mp9:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpa:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpb:
26S proteasome in presence of AMP-PNP (s3)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpc:
26S proteasome in presence of BeFx (s4)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpd:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpe:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

EMDB-3506:
cryoEM structure of bacterial holo-translocon
Method: single particle / : Schaffitzel C, Botte M, Karuppasamy M, Papai G, Schultz P

PDB-5mg3:
EM fitted model of bacterial holo-translocon
Method: single particle / : Schaffitzel C, Botte M

PDB-5l4g:
The human 26S proteasome at 3.9 A
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

PDB-5l4k:
The human 26S proteasome lid
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

EMDB-3075:
Cyclophilin A Stabilizes HIV-1 Capsid through a Novel Non-canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

EMDB-4002:
The human 26S proteasome at 3.9
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

EMDB-3076:
Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non-canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

PDB-5fjb:
Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non- canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

PDB-4urd:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

EMDB-6319:
Structure of bacterial chemotaxis signaling CheA2-trimer core complex by cryo-electron tomography and subvolume averaging
Method: subtomogram averaging / : Cassidy CK, Himes BA, Alvarez FJ, Ma J, Zhou G, Perilla JR, Schulten K, Zhang P

EMDB-6320:
Structure of bacterial chemotaxis signaling CheA2-hexamer core complex by cryo-electron tomography and subvolume averaging
Method: subtomogram averaging / : Cassidy CK, Himes BA, Alvarez FJ, Ma J, Zhou G, Perilla JR, Schulten K, Zhang P

PDB-3ja6:
Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling
Method: electron tomography / : Cassidy CK, Himes BA, Alvarez FJ, Ma J, Zhao G, Perilla JR, Schulten K, Zhang P

EMDB-3234:
Representative tomogram as used in: Structure of bacterial chemotaxis signaling CheA2-trimer core complex by cryo-electron tomography and subvolume averaging
Method: electron tomography / : Cassidy CK, Himes BA, Alvarez FJ, Ma J, Zhou G, Perilla JR, Schulten K, Zhang P

EMDB-2711:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

EMDB-2695:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

EMDB-2696:
Cryo-EM map of Trigger Factor bound to a translating ribosome
Method: single particle / : Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R

PDB-4utq:
A structural model of the active ribosome-bound membrane protein insertase YidC
Method: single particle / : Wickles S, Singharoy A, Andreani J, Seemayer S, Bischoff L, Berninghausen O, Soeding J, Schulten K, vanderSluis EO, Beckmann R

EMDB-2705:
A structural model of the active ribosome-bound membrane protein insertase YidC
Method: single particle / : Wickles S, Singharoy A, Andreani J, Seemayer S, Bischoff L, Berninghausen O, Soeding J, Schulten K, van der Sluis EO, Beckmann R

PDB-4v6v:
Tetracycline resistance protein Tet(O) bound to the ribosome
Method: single particle / : Li W, Atkinson GC, Thakor NS, Allas U, Lu C, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J

PDB-4v6n:
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6o:
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6p:
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6q:
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6r:
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6s:
Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6m:
Structure of the ribosome-SecYE complex in the membrane environment
Method: single particle / : Frauenfeld J, Gumbart J, van der Sluis EO, Funes S, Gartmann M, Beatrix B, Mielke T, Berninghausen O, Becker T, Schulten K, Beckmann R

PDB-4v6k:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6l:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v5h:
E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
Method: single particle / : Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache J, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R

PDB-4v7i:
Ribosome-SecY complex.
Method: single particle / : Gumbart JC, Trabuco LG, Schreiner E, Villa E, Schulten K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more