[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 18 items for (author: scherer & pe)

EMDB-45301:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-45302:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-48344:
D24.1M01 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

EMDB-48345:
A7M08 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

EMDB-48346:
B25M05 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

PDB-9ml1:
D24.1M01 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

PDB-9ml2:
A7M08 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

PDB-9ml3:
B25M05 Fab bound to HPV16 L1 pentamer
Method: single particle / : Hurlburt NK, Singh S, Rodarte JV, Pancera M

PDB-7p77:
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p78:
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 1up/1up-out/1down conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p79:
SARS-CoV-2 spike protein in complex with sybodyb#15 in a 1up/1up-out/1down conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p7a:
SARS-CoV-2 spike protein in complex with sybody#68 in a 2up/1flexible conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

PDB-7p7b:
SARS-CoV-2 spike protein in complex with sybody no68 in a 1up/2down conformation
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-20053:
Cryo-EM structure of YenTcA in its prepore state
Method: single particle / : Piper SJ, Brillault L

EMDB-20054:
Cryo-EM structure of YenTcA in the pore state determined in liposomes
Method: single particle / : Landsberg MJ, Piper SJ

PDB-6ogd:
Cryo-EM structure of YenTcA in its prepore state
Method: single particle / : Piper SJ, Brillault L, Box JK, Landsberg MJ

EMDB-2971:
Structure and assembly of the mouse ASC filament
Method: helical / : Sborgi L, Ravotti F, Dandey VP, Dick MS, Mazur A, Reckel S, Chami M, Scherer S, Bockmann A, Egelman EH, Stahlberg H, Broz P, Meier BH, Hiller S

PDB-2n1f:
Structure and assembly of the mouse ASC filament by combined NMR spectroscopy and cryo-electron microscopy
Method: helical / : Sborgi L, Ravotti F, Dandey V, Dick M, Mazur A, Reckel S, Chami M, Scherer S, Bockmann A, Egelman E, Stahlberg H, Broz P, Meier B, Hiller S

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more