[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 311 items for (author: santos & r)

EMDB-72657:
HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

PDB-9y7j:
HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

EMDB-71817:
HIV-1 CA hexamer from purified viral cores, C6 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

PDB-9prz:
HIV-1 CA hexamer from purified viral cores, C6 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

EMDB-71816:
HIV-1 CA hexamer from purified viral cores, C1 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

PDB-9pry:
HIV-1 CA hexamer from purified viral cores, C1 symmetry
Method: single particle / : Barros dos Santos NF, Ganser-Pornillos BK, Pornillos O

EMDB-48337:
FnoCas12a bridge helix variant state 1
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48338:
FnoCas12a bridge helix variant state 2
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48339:
FnoCas12a bridge helix variant state 3
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48340:
FnoCas12a bridge helix variant state 4a
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-48341:
FnoCas12a bridge helix variant state 4b
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkt:
FnoCas12a bridge helix variant state 1
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mku:
FnoCas12a bridge helix variant state 2
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkv:
FnoCas12a bridge helix variant state 3
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkw:
FnoCas12a bridge helix variant state 4a
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

PDB-9mkx:
FnoCas12a bridge helix variant state 4b
Method: single particle / : Ganguly C, Thomas LM, Aribam SD, Martin L, Rajan R

EMDB-53553:
Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
Method: single particle / : Jurkeviciute G, He JZ, Enchev RI

PDB-9r3a:
Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
Method: single particle / : Jurkeviciute G, He JZ, Enchev RI

EMDB-71643:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

EMDB-71644:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

PDB-9pha:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

PDB-9phb:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

EMDB-43641:
HIV-1 R18L CA hexamer
Method: single particle / : Schirra RT, Pornillos O, Ganser-Pornillos BK

EMDB-43642:
HIV-1 R18L CA pentamer from capsid-like particles assembled in 1 M NaCl
Method: single particle / : Schirra RT, Pornillos O, Ganser-Pornillos BK

PDB-8vxv:
HIV-1 R18L CA hexamer
Method: single particle / : Schirra RT, Pornillos O, Ganser-Pornillos BK

PDB-8vxw:
HIV-1 R18L CA pentamer from capsid-like particles assembled in 1 M NaCl
Method: single particle / : Schirra RT, Pornillos O, Ganser-Pornillos BK

EMDB-51635:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

PDB-9gvg:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

EMDB-48251:
Consensus refinement of the barrel region of beta-barrel assembly machine from Escherichia coli in an late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48253:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48254:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48255:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mge:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgf:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgg:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-47531:
T4 bacteriophage replicative holoenzyme, DNA in right Polymerase(State 1)
Method: single particle / : Li H, Feng X

EMDB-47824:
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase(State 2)
Method: single particle / : Li H, Feng X

EMDB-47825:
T4 bacteriophage replicative holoenzyme with triple mutants D75R, Q430E, and K432E on exo- Polymerase
Method: single particle / : Li H, Feng X

EMDB-47826:
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase(State 3)
Method: single particle / : Li H, Feng X

PDB-9e5y:
T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 1
Method: single particle / : Li H, Feng X

PDB-9ea2:
T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 2
Method: single particle / : Li H, Feng X

PDB-9ea3:
T4 bacteriophage replicative holoenzyme containing triple mutations D75R, Q430E, and K432E in the exonuclease-deficient polymerase
Method: single particle / : Li H, Feng X

PDB-9ea6:
T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 3
Method: single particle / : Li H, Feng X

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-72036:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

PDB-9pym:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

EMDB-47110:
Cryo-EM structure of a double-loaded SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

EMDB-47127:
Cryo-EM structure of a SUMO E1-E2-SUMO1 complex.
Method: single particle / : Jia L, Nayak D, Ruben EA, Nayak A, Wasmuth EV, Olsen SK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more