[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 244 items for (author: sabin & c)

EMDB-75133:
FcgRIIa in complex with IV.3 Fab
Method: single particle / : Coller BS, Wang JL

PDB-10fj:
FcgRIIa in complex with IV.3 Fab
Method: single particle / : Coller BS, Wang JL

EMDB-54871:
F-actin in complex with USP54 M1 actin binding motif
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

PDB-9sgk:
F-actin in complex with USP54 M1 actin binding motif
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

EMDB-53133:
F-actin decorated by ITPKA
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

PDB-9qgk:
F-actin decorated by ITPKA
Method: helical / : Yuan B, Paraschiakos T, Windhorst S, Marlovits TC

EMDB-53860:
Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
Method: single particle / : Grundmann L, Zhang Y, Grishkovskaya I, Rospert S, Haselbach D

EMDB-53861:
Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
Method: single particle / : Grundmann L, Zhang Y, Grishkovskaya I, Rospert S, Haselbach D

PDB-9r9o:
Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
Method: single particle / : Grundmann L, Zhang Y, Grishkovskaya I, Rospert S, Haselbach D

PDB-9r9p:
Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
Method: single particle / : Grundmann L, Zhang Y, Grishkovskaya I, Rospert S, Haselbach D

EMDB-52631:
Structure of the Chaetomium thermophilum Pmt4 homodimer (C2 symmetry)
Method: single particle / : McDowell MA, Wild K, Sinning I

EMDB-52632:
Structure of the Chaetomium thermophilum Pmt4 homodimer (C1 symmetry)
Method: single particle / : McDowell MA, Wild K, Sinning I

PDB-9i5k:
Structure of the Chaetomium thermophilum Pmt4 homodimer (C2 symmetry)
Method: single particle / : McDowell MA, Wild K, Sinning I

PDB-9i5l:
Structure of the Chaetomium thermophilum Pmt4 homodimer (C1 symmetry)
Method: single particle / : McDowell MA, Wild K, Sinning I

EMDB-70593:
Symmetry-expanded reconstruction of augmin T-II bonsai on the GTPgammaS microtubule
Method: single particle / : Travis SM, Zhang R

PDB-9olh:
Symmetry-expanded reconstruction of augmin T-II bonsai on the GTPgammaS microtubule
Method: single particle / : Travis SM, Zhang R

EMDB-45100:
XMAP215 TOG5 interaction with GMPCPP tubulin lattice
Method: helical / : McManus CT, Travis SM, Jeffrey PD, Zhang R, Petry S

PDB-9c13:
XMAP215 TOG5 interaction with GMPCPP tubulin lattice
Method: helical / : McManus CT, Travis SM, Jeffrey PD, Zhang R, Petry S

EMDB-51530:
Capsid of full Haloferax tailed virus 1 without turret head protein gp31.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M, Stuart W

EMDB-51866:
Tail of full Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-51883:
Tail fibre of Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-51915:
The baseplate assembly of Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

PDB-9gs0:
Capsid of full Haloferax tailed virus 1 without turret head protein gp31.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M, Stuart W

PDB-9h4p:
Tail of full Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

PDB-9h5b:
Tail fibre of Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

PDB-9h7v:
The baseplate assembly of Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-46488:
C1 reconstruction of augmin T-II bonsai on the microtubule
Method: single particle / : Travis SM, Zhang R

EMDB-46489:
Symmetry-expanded reconstruction of augmin T-II bonsai on the microtubule
Method: single particle / : Travis SM, Zhang R

PDB-9d2b:
Symmetry-expanded reconstruction of augmin T-II bonsai on the microtubule
Method: single particle / : Travis SM, Zhang R

EMDB-48707:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

PDB-9mx1:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

EMDB-52652:
CryoEM structure of the Chaetomium thermophilum TOM core complex at 2.7 angstrom resolution (pALDH treated)
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

EMDB-52658:
CryoEM structure of the Chaetomium thermophilum TOM core complex at 3.2 angstrom resolution
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

EMDB-52660:
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.2 angstrom resolution (pALDH treated)
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

EMDB-52661:
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.8 angstrom resolution
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

PDB-9i6b:
CryoEM structure of the Chaetomium thermophilum TOM core complex at 2.7 angstrom resolution (pALDH treated)
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

PDB-9i7p:
CryoEM structure of the Chaetomium thermophilum TOM core complex at 3.2 angstrom resolution
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

PDB-9i7s:
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.2 angstrom resolution (pALDH treated)
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

PDB-9i7t:
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.8 angstrom resolution
Method: single particle / : Agip ANA, Ornelas P, Yang TJ, Ermanno U, Haeder S, McDowell MA, Kuehlbrandt W

EMDB-50521:
Tail of emppty Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

PDB-9fkb:
Tail of emppty Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-51916:
Structure of the outer membrane exopolysaccharide transporter PelBC
Method: single particle / : Benedens M, Rosales C, Beckmann R, Kedrov A

PDB-9h80:
Structure of the outer membrane exopolysaccharide transporter PelBC
Method: single particle / : Benedens M, Rosales C, Beckmann R, Kedrov A

EMDB-50098:
Initial 3D Map of relaxosome complex with oriT DNA ds-27_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50099:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_+8ds+9_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50102:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-8ds-7_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50103:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-13ds-12_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50104:
Initial 3D Map of relaxosome complex with oriT DNA ds-2_+113deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50105:
Initial 3D Map of relaxosome complex with oriT DNA ds-67_+113(poly-dT15-17_-3)deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50117:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more