[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 130 items for (author: rossi & j)

EMDB-53489:
Cryo-EM structure of human MATE1 in complex with cimetidine
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53506:
Cryo-EM structure of human MATE1 in complex with MPP
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53507:
Cryo-EM structure of human MATE1 in complex with metformin
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53508:
Cryo-EM structure of human MATE1
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r10:
Cryo-EM structure of human MATE1 in complex with cimetidine
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1e:
Cryo-EM structure of human MATE1 in complex with MPP
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1f:
Cryo-EM structure of human MATE1 in complex with metformin
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1g:
Cryo-EM structure of human MATE1
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53474:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

PDB-9qzq:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

EMDB-48770:
PP2A Holoenzyme with B55 subunit
Method: single particle / : Shi S, Li X, Alderman C, Huang W, Foulon N, Rossi J, Cui S, Taylor D, Ford HL, Zhao R

EMDB-51168:
MtUvrA2 bound to endogenous E. coli DNA at low resolution
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-46984:
Vibrio cholerae DnaB
Method: single particle / : Mazzoletti D, Peng A, Gao N, Olinares PDB, Morrone C, Garavaglia A, Mendoza A, Chowdhury A, Gouda N, Tsoy S, Bhavsar H, Cerullo A, Rossi F, Rizzi M, Chait BT, Miggiano R, Jeruzalmi D

PDB-9dls:
Vibrio cholerae DnaB
Method: single particle / : Mazzoletti D, Peng A, Gao N, Olinares PDB, Morrone C, Garavaglia A, Mendoza A, Chowdhury A, Gouda N, Tsoy S, Bhavsar H, Cerullo A, Rossi F, Rizzi M, Chait BT, Miggiano R, Jeruzalmi D

EMDB-48798:
PP2A-B55 Holoenzyme with Eya3
Method: single particle / : Shi S, Alderman C, Huang W, Zhao R

EMDB-48799:
PP2A-B55 Holoenzyme with B55i
Method: single particle / : Shi S, Alderman C, Huang W, Zhao R

PDB-9n0y:
PP2A-B55 Holoenzyme with Eya3
Method: single particle / : Shi S, Li X, Alderman C, Zhao R

PDB-9n0z:
PP2A-B55 Holoenzyme with B55i
Method: single particle / : Shi S, Li X, Alderman C, Zhao R

EMDB-51169:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51170:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51171:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 1)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51172:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 2)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51173:
Composite map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51174:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51220:
Consensus map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga2:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga3:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga4:
MtUvrA2UvrB2 bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga5:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-19880:
Cryo-EM structure of human apoferritin (grid prepared with EasyGrid technology)
Method: single particle / : Gemin O, Mattei S, Papp G

EMDB-18003:
ABCG2 in complex with AZ99 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

EMDB-18016:
ABCG2 in complex with ko143 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

EMDB-18210:
ABCG2 in complex with MZ29 and 5D3 Fab
Method: single particle / : Kowal J, Yu Q, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP, Manolaridis I, Jackson SM, Taylor NMI, Zechner M

EMDB-18330:
ABCG2 in complex with MZ82 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP

PDB-8pxo:
ABCG2 in complex with AZ99 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

PDB-8py4:
ABCG2 in complex with ko143 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Tajkhorshid E, Altmann KH, Locher KP

PDB-8q7b:
ABCG2 in complex with MZ29 and 5D3 Fab
Method: single particle / : Kowal J, Yu Q, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP, Manolaridis I, Jackson SM, Taylor NMI, Zechner M

PDB-8qcm:
ABCG2 in complex with MZ82 and 5D3 Fab
Method: single particle / : Yu Q, Kowal J, Ni D, Stahlberg H, Tajkhorshid E, Altmann KH, Locher KP

EMDB-42489:
Bacillus niacini flavin monooxygenase
Method: single particle / : Richardson BC, French JB

EMDB-42490:
Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Method: single particle / : Richardson BC, French JB

PDB-8urc:
Bacillus niacini flavin monooxygenase
Method: single particle / : Richardson BC, French JB

PDB-8urd:
Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Method: single particle / : Richardson BC, French JB

EMDB-18950:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-19004:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r6c:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r8m:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-50296:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-9fbv:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-43753:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

PDB-8w2o:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more