[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 146 items for (author: rima & l)

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-19452:
CryoEM structure of Molybdenum bispyranopterin guanine dinucleotide formate dehydrogenases ForCE1 from Bacillus subtilis
Method: single particle / : Cherrier MV, Arnoux P, Martin L, Nicolet Y, Schoehn G, Legrand P, Broc M, Seduk F, Brasseur G, Arias-Cartin R, Magalon A, Walburger A, Uzel A, Guigliarelli B, Grimaldi S, Pierrel F, Mate M

PDB-8rr0:
CryoEM structure of Molybdenum bispyranopterin guanine dinucleotide formate dehydrogenases ForCE1 from Bacillus subtilis
Method: single particle / : Cherrier MV, Arnoux P, Martin L, Nicolet Y, Schoehn G, Legrand P, Broc M, Seduk F, Brasseur G, Arias-Cartin R, Magalon A, Walburger A, Uzel A, Guigliarelli B, Grimaldi S, Pierrel F, Mate M

EMDB-49523:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-49525:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlv:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlx:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-17980:
Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C
Method: single particle / : Chandler F, Zeqiraj E

PDB-8pvy:
Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C
Method: single particle / : Chandler F, Zeqiraj E

EMDB-18009:
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Method: single particle / : Chandler F, Zeqiraj E

PDB-8py2:
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Method: single particle / : Chandler F, Zeqiraj E

EMDB-47889:
Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348
Method: single particle / : Whittington DA

PDB-9ebs:
Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348
Method: single particle / : Whittington DA

EMDB-46946:
TRIF TIR Filament Cryo-EM Structure
Method: helical / : Manik MK, Xiao L, Wu H

EMDB-46977:
CryoEM structure of the TIR domain from human TRAM
Method: helical / : Hedger A, Pospich S, Pan M, Gu W, Ve T, Raunser S, Landsberg M, Nanson JD, Kobe B

PDB-9dk8:
TRIF TIR Filament Cryo-EM Structure
Method: helical / : Manik MK, Xiao L, Wu H

PDB-9dlg:
CryoEM structure of the TIR domain from human TRAM
Method: helical / : Hedger A, Pospich S, Pan M, Gu W, Ve T, Raunser S, Landsberg M, Nanson JD, Kobe B

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-17757:
Cryo-EM structure of the Cas12m-crRNA-target DNA complex
Method: single particle / : Sasnauskas G, Tamulaitiene G, Karvelis T, Bigelyte G, Siksnys V

PDB-8pm4:
Cryo-EM structure of the Cas12m-crRNA-target DNA complex
Method: single particle / : Sasnauskas G, Tamulaitiene G, Karvelis T, Bigelyte G, Siksnys V

EMDB-18498:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

PDB-8qmo:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26855:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

PDB-7ux9:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

EMDB-28758:
Calcitonin Receptor in complex with Gs and Pramlintide analogue peptide San45
Method: single particle / : Cao J, Sexton PM, Wootten DL, Belousoff MJ

EMDB-28759:
Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385
Method: single particle / : Cao J, Sexton PM, Wootten DL

EMDB-28810:
Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385 (Cluster 5 conformation)
Method: single particle / : Cao J, Sexton PM, Wootten DL, Radostin D

EMDB-28812:
Amylin 3 Receptor in complex with Gs and Pramlintide analogue peptide San45
Method: single particle / : Cao J, Sexton PM, Wootten DL, Belousoff MJ

PDB-8f0j:
Calcitonin Receptor in complex with Gs and Pramlintide analogue peptide San45
Method: single particle / : Cao J, Sexton PM, Wootten DL, Belousoff MJ

PDB-8f0k:
Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385
Method: single particle / : Cao J, Sexton PM, Wootten DL

PDB-8f2a:
Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385 (Cluster 5 conformation)
Method: single particle / : Cao J, Sexton PM, Wootten DL, Radostin D

PDB-8f2b:
Amylin 3 Receptor in complex with Gs and Pramlintide analogue peptide San45
Method: single particle / : Cao J, Sexton PM, Wootten DL, Belousoff MJ

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

EMDB-16187:
Wild tye immature Gag Structure
Method: subtomogram averaging / : Zhu Y, Chen L, Hardenbrook N, Zhang P

EMDB-16190:
KAKA mutation immature Gag structure
Method: subtomogram averaging / : Zhu Y, Chen L, Hardenbrook N, Zhang P

EMDB-29789:
50S focus refined map of E.coli ribosome complexed with A-site ortho-aminobenzoic acid charged tRNA-Phe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29790:
30S focus refined map of WT E.coli ribosome complexed with A-site ortho-aminobenzoic acid charged tRNA-Phe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29800:
70S global refined map of E.coli 70S ribosome complexed with A-site meta-aminobenzoic acid charged tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29807:
70S global refined map of WT E.coli ribosome complexed with A-site 3-aminopyridine-4-carboxylic acid charged tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more