[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: reddem & er)

EMDB-45543:
Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45544:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45545:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45546:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45548:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 prefusion spike
Method: single particle / : Casner RG, Shapiro L

PDB-9cfe:
Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cff:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cfg:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cfh:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-26583:
Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-26584:
Cryo-EM structure of Antibody 12-19 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

PDB-7ukl:
Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

PDB-7ukm:
Cryo-EM structure of Antibody 12-19 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-26964:
Cryo-EM structure of NTD-directed non-neutralizing antibody 4-33 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Reddem ER, Shapiro L

EMDB-33892:
Omicron spike trimer bound with P3E6 (Local Refinement)
Method: single particle / : Tang B, Dang S

EMDB-33893:
Omicron Spike trimer bound with up P3E6 Fab (2 RBDs up and 1 RBD down)
Method: single particle / : Tang B, Dang S

EMDB-33894:
Omicron Spike trimer bound with side P3E6 Fab (1 RBD up and 2 RBDs down)
Method: single particle / : Tang B, Dang S

EMDB-27775:
Cryo-EM structure of RBD-directed neutralizing antibody P2B4 incomplex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Reddem ER, Shapiro L

EMDB-24075:
Cryo-EM structure of NTD-directed neutralizing antibody LP5 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Reddem ER, Casner RG

PDB-7mxp:
Cryo-EM structure of NTD-directed neutralizing antibody LP5 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Reddem ER, Casner RG, Shapiro L

EMDB-25146:
Broadly Neutralizing Antibody 10-40 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Reddem ER, Shapiro L

EMDB-25166:
Antibody 10-28 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-25167:
Antibody 11-11 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Method: single particle / : Casner RG, Shapiro L

EMDB-24708:
Cryo-EM structure of NTD-directed neutralizing antibody 5-7 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

PDB-7rw2:
Cryo-EM structure of NTD-directed neutralizing antibody 5-7 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23165:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-43
Method: single particle / : Rapp M, Shapiro L

EMDB-23166:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-15
Method: single particle / : Rapp M, Shapiro L

EMDB-23167:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab H4
Method: single particle / : Rapp M, Shapiro L

PDB-7l56:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-43
Method: single particle / : Rapp M, Shapiro L

PDB-7l57:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-15
Method: single particle / : Rapp M, Shapiro L

PDB-7l58:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab H4
Method: single particle / : Rapp M, Shapiro L

EMDB-23151:
Cryo-EM map of NTD-directed neutralizing antibody 2-51 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Rapp M, Shapiro L, Cerutti G

EMDB-23125:
Cryo-EM structure of NTD-directed neutralizing antibody 1-87 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23126:
Cryo-EM structure of NTD-directed neutralizing antibody 4-18 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23127:
Cryo-EM structure of NTD-directed neutralizing antibody 5-24 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23150:
Cryo-EM map of NTD-directed neutralizing antibody 1-68 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23489:
Cryo-EM structure of NTD-directed neutralizing antibody 4-8 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Gorman J, Rapp M

EMDB-23490:
Cryo-EM structure of NTD-directed neutralizing antibody 2-17 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Gorman J, Rapp M

PDB-7l2d:
Cryo-EM structure of NTD-directed neutralizing antibody 1-87 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

PDB-7l2e:
Cryo-EM structure of NTD-directed neutralizing antibody 4-18 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

PDB-7l2f:
Cryo-EM structure of NTD-directed neutralizing antibody 5-24 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

PDB-7lqv:
Cryo-EM structure of NTD-directed neutralizing antibody 4-8 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Gorman J, Rapp M, Kwong PD, Shapiro L

PDB-7lqw:
Cryo-EM structure of NTD-directed neutralizing antibody 2-17 Fab in complex with SARS-CoV-2 S2P spike
Method: single particle / : Gorman J, Rapp M, Kwong PD, Shapiro L

EMDB-23506:
Cryo-EM structure of neutralizing antibody 1-57 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

EMDB-23507:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-7
Method: single particle / : Rapp M, Shapiro L

PDB-7ls9:
Cryo-EM structure of neutralizing antibody 1-57 in complex with prefusion SARS-CoV-2 spike glycoprotein
Method: single particle / : Cerutti G, Shapiro L

PDB-7lss:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-7
Method: single particle / : Rapp M, Shapiro L

EMDB-23016:
Cryo-EM structure of prefusion SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab
Method: single particle / : Cerutti G, Shapiro L

EMDB-23039:
Cryo-EM map of SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab (disrupted form)
Method: single particle / : Cerutti G, Shapiro L

PDB-7ks9:
Cryo-EM structure of prefusion SARS-CoV-2 spike glycoprotein in complex with 910-30 Fab
Method: single particle / : Cerutti G, Shapiro L

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more