[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,514 items for (author: ray & p)

EMDB-49747:
MPXV replisome bound to ssDNA
Method: single particle / : Yu Z, Abraham J

EMDB-75504:
MPXV replisome bound to forked DNA
Method: single particle / : Yu Z, Abraham J

EMDB-76148:
MPXV polymerase-E5 primase core complex
Method: single particle / : Yu Z, Abarham J

EMDB-53928:
Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

EMDB-53942:
Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

EMDB-54645:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in water
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-54646:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-54647:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9rd7:
Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

PDB-9rfv:
Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

PDB-9s7o:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in water
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9s7p:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9s7q:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-71880:
NorA in outward-open conformation bound to inhibitor IMP2380
Method: single particle / : Suwatthee T, Gray JL, Ledger EVK, Wang D, Edwards A, Tate EW, Traaseth NJ

EMDB-77477:
apo-bmCCAN consensus refinement
Method: single particle / : Yatskevich S, Ciferri C

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-57240:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

PDB-29km:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-77084:
MCU-EMRE complex with spermine
Method: single particle / : Wang Q, Balderas E, Rai NK, Cao E, Chaudhuri D

PDB-13io:
MCU-EMRE complex with spermine
Method: single particle / : Wang Q, Balderas E, Rai NK, Cao E, Chaudhuri D

EMDB-70561:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70567:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

PDB-9oke:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okk:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

EMDB-55048:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55049:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's HMP extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55050:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's N-terminal extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-68793:
Vpb4Aa2 pore complex in C1 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

EMDB-71647:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

PDB-22zo:
Single full-length subunit of the Vpb4Aa2 pore complex
Method: single particle / : Wirawan R, Lupton CJ, Venugopal H, Berry C, Dunstone MA, Spicer BA

PDB-9phf:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-70558:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70560:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70568:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okb:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okd:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okl:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

EMDB-65772:
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65773:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem docked at the AspRS active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65774:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem in an intermediate position toward the ATT active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more