[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 96 items for (author: rangan & r)

EMDB-70125:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample 1), applying a Matlab-based deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-70126:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region1), applied a Matlab-based deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-70133:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region2), applied a Matlab-based deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-49419:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR sample3, without deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-49298:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct (sample 2)
Method: electron tomography / : Chen X, Walters KJ

EMDB-49381:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR sample2, region3, without deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-48920:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR sample1, region2
Method: electron tomography / : Chen X, Walters KJ

EMDB-48925:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR construct
Method: electron tomography / : Chen X, Walters KJ

EMDB-48951:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR sample2
Method: electron tomography / : Chen X, Walters KJ

EMDB-49041:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR sample 1, region 1
Method: electron tomography / : Chen X, Walters KJ

EMDB-49051:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR sample2, region2, without deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-49052:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR sample2, region1, without deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-49054:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR sample1, without deconvolution filter
Method: electron tomography / : Chen X, Walters KJ

EMDB-54112:
CryoEM structure of the microtubule-AKAP13 C1 domain complex
Method: single particle / : Giono M, Choi SR, Filipcik P, Steinmetz MO

EMDB-51768:
Cryo-EM structure of taxol-microtubules in complex with the C1 domain of GEFH1
Method: single particle / : Choi SR, Blum T, Steinmetz MO

PDB-9h1o:
Cryo-EM structure of taxol-microtubules in complex with the C1 domain of GEFH1
Method: single particle / : Choi SR, Blum T, Steinmetz MO

EMDB-45236:
Subtomogram average (D3) of fatty acid synthase from S.cerevisiae prepared using cryo-plasmaFIB milling
Method: subtomogram averaging / : Feathers JR, Zhong ED, Khavnekar S

EMDB-37132:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

EMDB-37134:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

EMDB-37135:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

EMDB-37136:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

EMDB-37137:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

EMDB-37138:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-37140:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

EMDB-37141:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

EMDB-37142:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdd:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

PDB-8kdf:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

PDB-8kdg:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

PDB-8kdh:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

PDB-8kdi:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

PDB-8kdj:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdn:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

PDB-8kdo:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

PDB-8kdp:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-42578:
Subtomogram average of the Metallosphaera javensis AS-7 Surface layer
Method: subtomogram averaging / : Ghosal D, Johnson MD, Shepherd DC

EMDB-42579:
Subtomogram average of the the Metallosphaera javensis AS-7 primed nanotube
Method: subtomogram averaging / : Ghosal D, Johnson MD, Shepherd D

EMDB-45235:
Subtomogram average (C1) of fatty acid synthase from S.cerevisiae prepared using cryo-plasmaFIB milling
Method: subtomogram averaging / : Feathers JR, Zhong ED, Khavnekar S

EMDB-50672:
A 3.3A sub-tomogram average of HIV-1 CA-SP1 from 5 tomograms in EMPIAR-10164 obtained using RELION 5
Method: subtomogram averaging / : Toader B, Scheres SHW

EMDB-18231:
CryoDRGN Reconstruction of 80S Ribosome in Rotated State from S.cerevisiae Prepared using Cryo-plasmaFIB Milling
Method: subtomogram averaging / : Rangan R, Khavnekar S, Lerer A, Johnston J, Kelley R, Obr M, Kotecha A, Zhong ED

EMDB-18232:
CryoDRGN Reconstruction of 80S Ribosome in Unrotated State from S.cerevisiae Prepared using Cryo-plasmaFIB Milling
Method: subtomogram averaging / : Rangan R, Khavnekar S, Lerer A, Johnston J, Kelley R, Obr M, Kotecha A, Zhong ED

EMDB-15022:
CryoEM structure of Ku heterodimer bound to DNA, PAXX and XLF
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

EMDB-16044:
DNA-PK Ku80 mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-16070:
DNA-PK XLF mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-16074:
DNA-PK Ku80 mediated dimer bound to PAXX and XLF
Method: single particle / : Hardwick SW, Chaplin AK

PDB-7zyg:
CryoEM structure of Ku heterodimer bound to DNA, PAXX and XLF
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

PDB-8bh3:
DNA-PK Ku80 mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

PDB-8bhv:
DNA-PK XLF mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

PDB-8bhy:
DNA-PK Ku80 mediated dimer bound to PAXX and XLF
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-14995:
CryoEM structure of Ku heterodimer bound to DNA and PAXX
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more