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- EMDB-18232: CryoDRGN Reconstruction of 80S Ribosome in Unrotated State from S... -
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Open data
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Basic information
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Title | CryoDRGN Reconstruction of 80S Ribosome in Unrotated State from S.cerevisiae Prepared using Cryo-plasmaFIB Milling | |||||||||
![]() | TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated | |||||||||
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![]() | yeast 80S / ![]() | |||||||||
Biological species | ![]() ![]() ![]() | |||||||||
Method | subtomogram averaging / ![]() | |||||||||
![]() | Rangan R / Khavnekar S / Lerer A / Johnston J / Kelley R / Obr M / Kotecha A / Zhong ED | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Deep reconstructing generative networks for visualizing dynamic biomolecules inside cells Authors: Rangan R / Khavnekar S / Lerer A / Johnston J / Kelley R / Obr M / Kotecha A / Zhong ED | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 59.4 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 12.7 KB 12.7 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 9.1 KB | Display | ![]() |
Images | ![]() | 81.3 KB | ||
Masks | ![]() | 64 MB | ![]() | |
Others | ![]() ![]() | 59.3 MB 59.3 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
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Annotation | TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated | ||||||||||||||||||||
Voxel size | X=Y=Z: 1.96 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Mask #1
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Projections & Slices |
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Density Histograms |
-Half map: TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated
File | emd_18232_half_map_1.map | ||||||||||||
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Annotation | TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated
File | emd_18232_half_map_2.map | ||||||||||||
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Annotation | TOMOMAN-STOPGAP-Warp-Relion-M CryoDRGN-ET 80S yeast unrotated | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : 80S S. cerevisiae
Entire | Name: 80S S. cerevisiae |
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Components |
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-Supramolecule #1: 80S S. cerevisiae
Supramolecule | Name: 80S S. cerevisiae / type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() ![]() ![]() |
-Experimental details
-Structure determination
Method | ![]() |
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![]() | subtomogram averaging |
Aggregation state | cell |
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Sample preparation
Buffer | pH: 7 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 3.5 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |