[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: pumroy & ra)

EMDB-71784:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71786:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer with endonuclease domain density
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71787:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep pentamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71788:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C1 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71789:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C6 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71790:
Cryo-EM structure of ADP-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqj:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqm:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer with endonuclease domain density
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqo:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep pentamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqq:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C1 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqr:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C6 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqt:
Cryo-EM structure of ADP-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-44156:
Rat TRPV2 WT bound to probenecid
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

EMDB-44157:
Rat TRPV2 WT in the presence of probenecid and 2-APB
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

EMDB-44158:
Rat TRPV2 E724A/D725A Apo
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

EMDB-44159:
Rat TRPV2 E724A/D725A bound to 2-APB
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

EMDB-44160:
Rat TRPV2 E724A/D725A bound to probenecid
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

PDB-9b3u:
Rat TRPV2 WT bound to probenecid
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

PDB-9b3v:
Rat TRPV2 WT in the presence of probenecid and 2-APB
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

PDB-9b3w:
Rat TRPV2 E724A/D725A Apo
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

PDB-9b3x:
Rat TRPV2 E724A/D725A bound to 2-APB
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

PDB-9b3y:
Rat TRPV2 E724A/D725A bound to probenecid
Method: single particle / : Rocereta JA, Pumroy RA, Moiseenkova-Bell VY

EMDB-44161:
Rat TRPV2 E724A/D725A bound to probenecid and 2-APB
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

PDB-9b3z:
Rat TRPV2 E724A/D725A bound to probenecid and 2-APB
Method: single particle / : Pumroy RA, Rocereta JA, Moiseenkova-Bell VY

EMDB-45360:
Cryo-EM structure of TAP binding protein related (TAPBPR) in complex with HLA-A*02:01 bound to a suboptimal peptide.
Method: single particle / : Pumroy RP, Mallik L, Sun Y, Moiseenkova-Bell YV, Sgourakis NG

PDB-9c96:
Cryo-EM structure of TAP binding protein related (TAPBPR) in complex with HLA-A*02:01 bound to a suboptimal peptide.
Method: single particle / : Pumroy RP, Mallik L, Sun Y, Moiseenkova-Bell YV, Sgourakis NG

EMDB-29046:
Wildtype rat TRPV2 in nanodiscs bound to RR
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-29047:
Wildtype rat TRPV2 in nanodiscs bound to RR and 2-APB
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-29048:
RR-bound wildtype rabbit TRPV5 in nanodiscs
Method: single particle / : Fluck EC, De Jesus-Perez JJ, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

EMDB-29051:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and ruthenium red
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

PDB-8ffl:
Wildtype rat TRPV2 in nanodiscs bound to RR
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8ffm:
Wildtype rat TRPV2 in nanodiscs bound to RR and 2-APB
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8ffn:
RR-bound wildtype rabbit TRPV5 in nanodiscs
Method: single particle / : Fluck EC, De Jesus-Perez JJ, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

PDB-8ffq:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and ruthenium red
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

EMDB-41579:
Structure of full-length LexA bound to a RecA filament
Method: helical / : Cory MB, Li A, Kohli RM

PDB-8trg:
Structure of full-length LexA bound to a RecA filament
Method: helical / : Cory MB, Li A, Kohli RM

EMDB-28209:
Apo rat TRPV2 in nanodiscs, state 1
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

EMDB-28210:
Apo rat TRPV2 in nanodiscs, state 2
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

EMDB-28211:
Apo rat TRPV2 in nanodiscs, state 3
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

EMDB-28212:
rat TRPV2 in nanodiscs in the presence of weak acid at pH 5
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

PDB-8ekp:
Apo rat TRPV2 in nanodiscs, state 1
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

PDB-8ekq:
Apo rat TRPV2 in nanodiscs, state 2
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

PDB-8ekr:
Apo rat TRPV2 in nanodiscs, state 3
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

PDB-8eks:
rat TRPV2 in nanodiscs in the presence of weak acid at pH 5
Method: single particle / : Pumroy RA, Moiseenkova-Bell VY

EMDB-24109:
Inactivated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-24110:
Activated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-25650:
Activated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-25651:
Inactivated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

PDB-7n0m:
Inactivated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

PDB-7n0n:
Activated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more