[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 118 items for (author: potter & sc)

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73640:
The Kaggle CryoET Object Identification Challenge: ground truth beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73641:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73642:
The Kaggle CryoET Object Identification Challenge: ground truth thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73643:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-25143:
Structure of positive allosteric modulator-bound active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

EMDB-25144:
Structure of positive allosteric modulator-free active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

EMDB-25145:
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

PDB-7sil:
Structure of positive allosteric modulator-bound active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

PDB-7sim:
Structure of positive allosteric modulator-free active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

PDB-7sin:
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

EMDB-21188:
human delta protocadherin 1 full ectodomains on membranes of liposomes tomogram 1
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21189:
human delta protocadherin 1 full ectodomains on membranes tomogram 2
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21190:
human delta protocadherin 1 full ectodomains on membranes tomogram 3
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21191:
human non-clustered delta protocadherin 10 on membranes tomogram 1
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21192:
human non-clustered delta protocadherin 10 on membranes tomogram 2
Method: electron tomography / : Brasch J, Harrison OJ, Noble AJ, Carragher B, Potter CS

EMDB-21193:
human non-clustered delta protocadherin 10 full ectodomains on membranes tomogram 3
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-8992:
Cryo-electron tomogram of mouse rod connecting cilium and mother centriole with C9 sub-tomogram averaging
Method: electron tomography / : Zhang Z, Liu J, Schmid MF, Wensel TG

EMDB-8977:
Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Eng ET, Kwong PD

EMDB-20191:
Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6ot1:
Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-20189:
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-9189:
Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K

EMDB-9319:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody 17D4 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

EMDB-9320:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

EMDB-9359:
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6mpg:
Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6mph:
Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Kwong PD

PDB-6n1v:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody A12V163-a.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6n1w:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6nf2:
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6osy:
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-9197:
Mouse Protocadherin gamma B6 dimer-of-dimers
Method: subtomogram averaging / : Brasch J, Noble AJ, Shapiro L, Carragher B, Potter CS

EMDB-9198:
Mouse Protocadherin gamma B6 on membranes
Method: electron tomography / : Brasch J, Noble AJ, Shapiro L, Carragher B, Potter CS

EMDB-9199:
Mouse Protocadherin gamma B6 on membranes (energy filtered)
Method: electron tomography / : Brasch J, Noble AJ, Shapiro L, Carragher B, Potter CS

EMDB-9200:
Mouse Protocadherin gamma B6 cis mutant V563D on membranes (energy filtered)
Method: electron tomography / : Brasch J, Noble AJ, Shapiro L, Carragher B, Potter CS

EMDB-9135:
Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174
Method: single particle / : Acharya P, Stewart-Jones G

PDB-6mjz:
Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174
Method: single particle / : Acharya P, Stewart-Jones G, Carragher B, Potter CS, Kwong PD

EMDB-7622:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody vFP1.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

PDB-6cuf:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody vFP1.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

EMDB-7621:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

PDB-6cue:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

EMDB-7452:
Atomic structure of a rationally engineered gene delivery vector, AAV2.5
Method: single particle / : Burg M, Rosebrough C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more