[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: popp & d)

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qy7:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

PDB-8qyc:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

PDB-8qyd:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

PDB-8qyh:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

PDB-8qyk:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qyy:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-16214:
VaPomAB full length Saposin Nanodisc
Method: single particle / : Hu H, Taylor NMI

EMDB-16212:
VaPomAB_LMNG
Method: single particle / : Haidai H, Nicholas MIT

EMDB-16215:
VaPomAB MSP1D1 nanodisc
Method: single particle / : Haidai H, Nicholas MIT

PDB-8brd:
Mechanisms of ion selectivity and rotor coupling in the bacterial flagellar sodium-driven stator unit
Method: single particle / : Hu H, Taylor NMI

PDB-8bri:
VaPomAB MSP1D1 nanodisc
Method: single particle / : Hu H, Taylor NMI

EMDB-33007:
A CBg-ParM filament with ADP
Method: helical / : Koh A, Ali S, Robinson R, Narita A

EMDB-33008:
A CBg-ParM filament with GTP and a short incubation time
Method: helical / : Koh A, Ali S, Robinson R, Narita A

EMDB-33009:
A CBg-ParM filament with ADP
Method: helical / : Koh A, Ali S, Robinson R, Narita A

EMDB-33012:
A CBg-ParM filament with GTP or GDPPi
Method: helical / : Koh A, Ali S, Robinson R, Narita A

EMDB-26467:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR04 (1 RBD up and 1 RDB down)
Method: single particle / : Torres JL, Ward AB

EMDB-26470:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (1 RBD up, 1 RBD down)
Method: single particle / : Torres JL, Ward AB

EMDB-26472:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (1 RBD up)
Method: single particle / : Torres JL, Ward AB

EMDB-26473:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (3 RBD down)
Method: single particle / : Torres JL, Ward AB

EMDB-23249:
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Method: single particle / : Khayat R

EMDB-23250:
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Method: single particle / : Khayat R

PDB-7lar:
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Method: single particle / : Khayat R

PDB-7las:
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Method: single particle / : Khayat R

EMDB-4907:
Molybdenum storage protein under turnover conditions
Method: single particle / : Bruenle S, Mills DJ

PDB-6rkd:
Molybdenum storage protein under turnover conditions
Method: single particle / : Bruenle S, Mills DJ, Vonck J, Ermler U

EMDB-9757:
pCBH ParM filament
Method: helical / : Koh F, Narita A

EMDB-9758:
pCBH ParM filament
Method: helical / : Koh F, Narita A

PDB-6izr:
Whole structure of a 15-stranded ParM filament from Clostridium botulinum
Method: helical / : Koh F, Narita A, Lee LJ, Tan YZ, Dandey VP, Tanaka K, Popp D, Robinson RC

PDB-6izv:
Averaged strand structure of a 15-stranded ParM filament from Clostridium botulinum
Method: helical / : Koh F, Narita A, Lee LJ, Tan YZ, Dandey VP, Tanaka K, Popp D, Robinson RC

EMDB-2068:
Alp12 filament structure
Method: helical / : Popp D, Narita A, Lee LJ, Ghoshdastider U, Xue B, Srinivasan R, Balasubramanian MK, Tanaka T, Robinson RC

PDB-4apw:
Alp12 filament structure
Method: single particle / : Popp D, Narita A, Lee LJ, Ghoshdastider U, Xue B, Srinivasan R, Balasubramanian MK, Tanaka T, Robinson RC

EMDB-1470:
Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Method: helical / : Popp D, Narita A, Oda T, Fujisawa T, Matsuo H, Nitanai Y, Iwasa M, Maeda K, Onishi H, Maeda Y

PDB-2zhc:
ParM filament
Method: helical / : Popp D, Narita A, Oda T, Fujisawa T, Matsuo H, Nitanai Y, Iwasa M, Maeda K, Onishi H, Maeda Y

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more