[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 918 items for (author: ota & n)

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-64921:
Cryo-EM structure of human PLD3 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64922:
Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64923:
Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64924:
Cryo-EM structure of human PLD4 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64925:
Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbg:
Cryo-EM structure of human PLD3 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbh:
Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbi:
Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbj:
Cryo-EM structure of human PLD4 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbk:
Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-60541:
Cryo-EM analysis of TLR7 in complex with mGrArA
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-60515:
Cryo-EM analysis of TLR7 in complex with GUC-v1
Method: single particle / : Zhang Z, Ohto U, Shimizu T

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-61242:
Cryo-EM structure of native NCP-UV-DDB complex
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61243:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61246:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-2
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61247:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-3
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61248:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

PDB-9j8w:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-64947:
Cryo-EM structure of the human kappa opioid receptor signaling complex bound to compound A
Method: single particle / : Suno-Ikeda C, Sugita Y, Hirose M, Suno R

EMDB-65622:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9v6o:
Cryo-EM structure of human kappa opioid receptor - G protein signaling complex bound with nalfurafine.
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9w49:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

EMDB-47174:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

PDB-9dur:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

EMDB-62378:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62379:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62380:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62381:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62382:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjx:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjy:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjz:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk1:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk2:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-53349:
Apo form of the L protein from Rift Valley Fever Virus
Method: single particle / : Kral M, Das AR, Kotacka T, Blahosova A, Hodek J, Konvalinka J, Demo G, Kozisek M

PDB-9qtb:
Apo form of the L protein from Rift Valley Fever Virus
Method: single particle / : Kral M, Das AR, Kotacka T, Blahosova A, Hodek J, Konvalinka J, Demo G, Kozisek M

EMDB-64554:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64899:
human mitoirbosome trapped by retapamulin, global map
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64900:
human mitoirbosome trapped by retapamulin, focused map
Method: single particle / : Ando Y, Nureki O, Itoh Y

PDB-9uwh:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-72735:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q9 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72736:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q10 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72737:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q12 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72738:
HIV-1 Env 16055 NFL TD CC2+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72739:
HIV-1 Env BG505 NFL TD CC3+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-54924:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more