[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 962 items for (author: ota & n)

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-56582:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S body)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-56583:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S head)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-70169:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70171:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3C-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70172:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-HA-BCCP Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-49462:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

PDB-9nj2:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

EMDB-49477:
Computationally optimized broadly reactive influenza B hemagglutinin BC2 bound by antibody #46
Method: single particle / : Dzimianski JV, Kunkel I, Balasco Serrao VH, DuBois RM

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-65918:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

PDB-9wey:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-62001:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62002:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62003:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-62004:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k2z:
Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k30:
Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k31:
Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

PDB-9k32:
Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
Method: single particle / : Nagahata N, Yamada S, Yamashita K, Nishimasu H

EMDB-65730:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A
Method: single particle / : Zheng R, Ma LJ

EMDB-65732:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

EMDB-65733:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

EMDB-65734:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D
Method: single particle / : Zheng R, Ma LJ

EMDB-65771:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex
Method: single particle / : Zheng R, Ma LJ

EMDB-65809:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

EMDB-65810:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

EMDB-65827:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class E
Method: single particle / : Zheng R, Ma LJ

PDB-9w7q:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A
Method: single particle / : Zheng R, Ma LJ

PDB-9w7t:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

PDB-9w7u:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

PDB-9w7v:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D
Method: single particle / : Zheng R, Ma LJ

PDB-9w9d:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex
Method: single particle / : Zheng R, Ma LJ

PDB-9wa9:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

PDB-9waa:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

PDB-9waw:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class E
Method: single particle / : Zheng R, Ma LJ

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-64921:
Cryo-EM structure of human PLD3 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64922:
Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64923:
Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64924:
Cryo-EM structure of human PLD4 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more