[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 309 items for (author: oki & k)


EMDB entry, No image

EMDB-38845:
Icosahedrally averaged cryo-EM reconstruction of PhiKZ capsid before applying the "block-based" reconstruction method


EMDB entry, No image

EMDB-38846:
Block 1 of PhiKZ capsid


EMDB entry, No image

EMDB-38848:
Block 2 of PhiKZ capsid


EMDB entry, No image

EMDB-39002:
Composite cryo-EM map of PhiKZ capsid after applying the "block-based" reconstruction method

PDB-8y6v:
Near-atomic structure of icosahedrally averaged jumbo bacteriophage PhiKZ capsid

EMDB-39482:
mouse proteasome 20S subunit in complex with compound 1

EMDB-39565:
canine immunoproteasome 20S subunit in complex with compound 2

EMDB-39600:
canine immunoproteasome 20S subunit in complex with compound 1

EMDB-39612:
canine immunoproteasome 20S subunit in complex with compound 1

PDB-8ypk:
mouse proteasome 20S subunit in complex with compound 1

PDB-8ysx:
canine immunoproteasome 20S subunit in complex with compound 2

PDB-8yvg:
canine immunoproteasome 20S subunit in complex with compound 1

PDB-8yvp:
canine immunoproteasome 20S subunit in complex with compound 1

EMDB-36083:
Cryo-EM structure of DDM1-nucleosome complex

EMDB-36084:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones

EMDB-36085:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W

PDB-8j90:
Cryo-EM structure of DDM1-nucleosome complex

PDB-8j91:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones

PDB-8j92:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W

EMDB-37858:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)

EMDB-37859:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)

EMDB-37860:
SpCas9-pegRNA-target DNA complex (pre-initiation)

EMDB-37861:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)

EMDB-39253:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)

PDB-8wus:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)

PDB-8wut:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)

PDB-8wuu:
SpCas9-pegRNA-target DNA complex (pre-initiation)

PDB-8wuv:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)

PDB-8ygj:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)

EMDB-38215:
Human GPR34 -Gi complex bound to S3E-LysoPS

EMDB-38217:
Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused

PDB-8xbe:
Human GPR34 -Gi complex bound to S3E-LysoPS

PDB-8xbg:
Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused

EMDB-17104:
AApoAII amyloid fibril Morphology II (ex vivo)

EMDB-17105:
AApoAII amyloid fibril Morphology I (ex vivo)

PDB-8oq4:
AApoAII amyloid fibril Morphology II (ex vivo)

PDB-8oq5:
AApoAII amyloid fibril Morphology I (ex vivo)

EMDB-19064:
CryoEM reconstruction of SARS-CoV-2 spike in complex with nanobody tri-TMH (partially open conformation)

EMDB-19068:
CryoEM reconstruction of SARS-CoV-2 Spike in complex with nanobody tri-TMH (closed conformation)

EMDB-35448:
Overlapping tri-nucleosome

PDB-8ihl:
Overlapping tri-nucleosome

EMDB-38218:
Human GPR34 -Gi complex bound to M1

EMDB-38219:
Human GPR34 -Gi complex bound to M1, receptor focused

PDB-8xbh:
Human GPR34 -Gi complex bound to M1

PDB-8xbi:
Human GPR34 -Gi complex bound to M1, receptor focused

EMDB-16828:
Structure of the mammalian Pol II-SPT6 complex, Struture 4 (Global map)

EMDB-16829:
Structure of the mammalian Pol II-SPT6 complex, Structure 4 (Focused map for SPT6)

EMDB-16830:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for elongin, map 5)

EMDB-16831:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for Pol II core, Map 6)

EMDB-16832:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for Pol II stalk, map 7)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more