[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 65 items for (author: nimigean & cm)

EMDB-74534:
CNGA1 channel closed state in nanodisc cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74535:
CNGA1 channel intermediate state in nanodisc cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74536:
CNGA1 channel open state in nanodisc cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74537:
CNGA1 channel closed state in nanodisc with brain PIP2 cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74538:
CNGA1 channel intermediate state in nanodisc with brain PIP2 cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-74539:
CNGA1 channel closed state in nanodisc with diC8-PIP2 cGMP-free
Method: single particle / : Park T, Nimigean CM

EMDB-74540:
CNGA1 channel intermediate state in nanodisc with diC8-PIP2 cGMP-bound
Method: single particle / : Park T, Nimigean CM

EMDB-46416:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46418:
Ca2+ free hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46419:
Ca2+ free hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46421:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46423:
Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in nanodisc.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46425:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent.
Method: single particle / : Agarwal S, Nimigean C

EMDB-46467:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent- Class 2
Method: single particle / : Agarwal S, Nimigean C

EMDB-46468:
Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-Class 3
Method: single particle / : Agarwal S, Nimigean C

EMDB-43520:
WT SthK in the presence of PIP2 and cAMP
Method: single particle / : Schmidpeter PAM, Thon O, Nimigean CM

EMDB-43521:
SthK R120A in the presence of PIP2 and cAMP
Method: single particle / : Schmidpeter PAM, Thon O, Nimigean CM

EMDB-43522:
SthK R120A R124A in the presence of PIP2 and cAMP
Method: single particle / : Schmidpeter PAM, Thon O, Nimigean CM

EMDB-42116:
HCN1 complex with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-42117:
HCN1 nanodisc
Method: single particle / : Kim ED, Nimigean CM

EMDB-44425:
HCN1 M305L with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-44426:
HCN1 M305L holo
Method: single particle / : Kim ED, Nimigean CM

EMDB-29605:
TpeA bound closed MthK-A88F mutant in nanodisc
Method: single particle / : Agarwal S, Nimigean CM

EMDB-40181:
Human TRPV3 tetramer structure, closed conformation
Method: single particle / : Lansky S, Betancourt JM, Scheuring S

EMDB-40183:
Human TRPV3 pentamer structure
Method: single particle / : Lansky S, Betancourt JM, Scheuring S

EMDB-27459:
MthK-A90L mutant in closed state with 0 Ca2+
Method: single particle / : Agarwal S, Nimigean CM

EMDB-27386:
Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM detergent
Method: single particle / : Schmidpeter PAM, Nimigean CM, Riegelhaupt PM

EMDB-27387:
Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM/POPA mixed micelles
Method: single particle / : Schmidpeter PAM, Nimigean CM, Riegelhaupt PM

EMDB-27388:
Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM/POPE mixed micelles
Method: single particle / : Schmidpeter PAM, Nimigean CM, Riegelhaupt PM

EMDB-24670:
SthK Y26F Closed State
Method: single particle / : Gao X, Nimigean C

EMDB-24681:
SthK R120A Closed State
Method: single particle / : Gao X, Nimigean C

EMDB-24682:
SthK Y26F Activated State
Method: single particle / : Gao X, Nimigean C

EMDB-24692:
SthK R120A Open State 1
Method: single particle / : Gao X, Nimigean C, Schmidpeter P

EMDB-24746:
SthK R120A Open State 3
Method: single particle / : Gao X, Nimigean C, Schmidpeter P

EMDB-24747:
SthK R120A Open State 2
Method: single particle / : Gao X, Nimigean C, Schmidpeter P

EMDB-25916:
SthK closed state, cAMP-bound in the presence of POPA
Method: single particle / : Schmidpeter PA, Nimigean CM

EMDB-25917:
SthK open state, cAMP-bound in the presence of POPA
Method: single particle / : Schmidpeter PA, Nimigean CM

EMDB-25981:
SthK closed state, cAMP-bound in the presence of detergent
Method: single particle / : Rheinberger J, Schmidpeter PA

EMDB-9405:
Blocker-free closed MthK channel in nanodisc
Method: single particle / : Fan C, Nimigean CM

EMDB-9406:
TPeA-bound closed MthK channel in nanodisc
Method: single particle / : Fan C, Nimigean CM

EMDB-9407:
bbTBA-bound closed MthK channel in nanodisc
Method: single particle / : Fan C, Nimigean CM

EMDB-21453:
SthK P300A cyclic nucleotide-gated potassium channel in the closed state, in complex with cAMP
Method: single particle / : Schmidpeter PAM, Rheinberger J, Nimigean CM

EMDB-21454:
SthK P300A cyclic nucleotide-gated potassium channel in a putative active state, in complex with cAMP
Method: single particle / : Schmidpeter PAM, Rheinberger J, Nimigean CM

EMDB-20665:
Calcium-bound MthK open-inactivated state 3
Method: single particle / : Chen F, Crina N

EMDB-20650:
Calcium-bound MthK gating ring state 2
Method: single particle / : Fan C, Nimigean C

EMDB-20652:
Calcium-bound MthK gating ring state 1
Method: single particle / : Fan C, Nimigean CM

EMDB-20653:
Calcium-bound MthK closed state
Method: single particle / : Fan C, Nimigean CM

EMDB-20662:
Calcium-bound MthK open-inactivated state 1
Method: single particle / : Fan C, Nimigean CM

EMDB-20663:
MthK closed state with EDTA
Method: single particle / : Fan C, Rheinberger J

EMDB-20664:
Calcium-bound MthK open-inactivated state 2
Method: single particle / : Fan C, Nimigean CM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more