[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 78 items for (author: nguyen & dm)

EMDB-49039:
Cryo-EM map of the Thermococcus sibiricus NfnABC complex

EMDB-49040:
Cryo-EM map of the NAD(H)-bound Thermococcus sibiricus NfnABC complex

EMDB-50592:
SOLIST native mouse heart muscle tomogram #3

EMDB-50603:
SOLIST cryo-tomogram of native mouse corpus callosum #1

EMDB-50604:
SOLIST cryo-tomogram of native mouse corpus callosum #2

EMDB-50605:
native mouse liver solist tomogram #1

EMDB-50606:
native mouse liver solist tomogram #2

EMDB-50607:
SOLIST cryo-tomogram of human brain organoid #1

EMDB-50608:
SOLIST cryo-tomogram of human brain organoid #2

EMDB-50620:
S. cerevisiae ribosome from SOLIST lamellas

EMDB-50630:
mus musculus ribosome from SOLIST lamellas

EMDB-50646:
mus musculus heart thin filament from SOLIST lamellas

EMDB-50655:
mus musculus heart thin filament with myosin heads from SOLIST lamellas

EMDB-50580:
SOLIST cryo-tomogram of native left ventricle mouse heart muscle #1

EMDB-50582:
SOLIST native mouse heart muscle tomogram #2

EMDB-18438:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

EMDB-18439:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

EMDB-18440:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

EMDB-18443:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 4

EMDB-18460:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

EMDB-18461:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

PDB-8qrk:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

PDB-8qrl:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

PDB-8qrm:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

PDB-8qrn:
mt-SSU in GTPBP8 knock-out cells, state 4

PDB-8qu1:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

PDB-8qu5:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4

EMDB-41994:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(CTD)/Gbeta1gamma2

EMDB-41995:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(BTB)/Cullin3(NTD)

EMDB-41996:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Composite Map from RELION Multi-body Refinement

EMDB-41997:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Reference Map for Composite Map EMD-41996

EMDB-41998:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2

EMDB-41999:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 2: RELION Multi-body Refinemnent of KCTD5(BTB)/Cullin3(NTD)

EMDB-42000:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Composite Map from RELION Multi-body Refinement

EMDB-42001:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Reference Map for Composite Map EMD-42000

EMDB-42002:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2

EMDB-42003:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)

EMDB-42004:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Composite Map from RELION Multi-body Refinement

EMDB-42005:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Reference Map for Composite Map EMD-42004

EMDB-42006:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2

EMDB-42007:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)

EMDB-42008:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Composite Map from RELION Multi-body Refinement

EMDB-42009:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Reference Map for Composite Map EMD-42008

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more