[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 65 items for (author: nguyen & dm)

EMDB-50580:
SOLIST cryo-tomogram of native left ventricle mouse heart muscle #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50582:
SOLIST native mouse heart muscle tomogram #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-18438:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18439:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18440:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18443:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 4
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18460:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18461:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrk:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrl:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrm:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrn:
mt-SSU in GTPBP8 knock-out cells, state 4
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qu1:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qu5:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

EMDB-41994:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41995:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41996:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41997:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Reference Map for Composite Map EMD-41996
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41998:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41999:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 2: RELION Multi-body Refinemnent of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42000:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42001:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Reference Map for Composite Map EMD-42000
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42002:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42003:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42004:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42005:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Reference Map for Composite Map EMD-42004
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42006:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42007:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42008:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42009:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Reference Map for Composite Map EMD-42008
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42010:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42011:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D Body 2: RELION Multi-body Refinemnent of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-26809:
KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

EMDB-26810:
KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

PDB-7uv9:
KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
Method: single particle / : Spangler CJ, Skrajna A, Foley CA, Budziszewski GR, Azzam DN, James LI, Frye SV, McGinty RK

EMDB-27903:
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Method: single particle / : Gerben S, Borst AJ, Baker D

PDB-8e55:
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Method: single particle / : Gerben S, Borst AJ, Baker D

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more