[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 93 items for (author: nguyen & dm)

EMDB-72825:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72826:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72827:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72828:
receptor focused refinement of human delta opioid receptor complex with mini-Gi and DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72829:
receptor focused refinement of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72830:
receptor focused refinement of human delta opioid receptor complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72831:
conensus map of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72832:
receptor focused refinement of human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-47879:
Human adenosine A3 receptor Gi1 complex bound to adenosine
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-47880:
Human adenosine A3 receptor Gi complex (mini-Gsi chimera) bound to Piclidenoson (CF101, IB-MECA)
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-47994:
Focused refinement map of the human A3 adenosine receptor bound to adenosine (receptor only)
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-47998:
Focused refinement map of the human A3 adenosine receptor bound to Piclidenoson (receptor only)
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-48063:
Consensus map for A3AR-LUF7602 complex.
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-48064:
Focused refinement map of the structure of a human adenosine A3 receptor complex bound to the covalent antagonist LUF7602 (receptor only)
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-48065:
Structure of a human adenosine A3 receptor complex bound to the covalent antagonist LUF7602
Method: single particle / : Zhang L, Mobbs JI, Glukhova A, Thal DM

EMDB-49039:
Cryo-EM map of the Thermococcus sibiricus NfnABC complex
Method: single particle / : Xiao X, Li H

EMDB-49040:
Cryo-EM map of the NAD(H)-bound Thermococcus sibiricus NfnABC complex
Method: single particle / : Xiao X, Li H

EMDB-50592:
SOLIST native mouse heart muscle tomogram #3
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50603:
SOLIST cryo-tomogram of native mouse corpus callosum #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50604:
SOLIST cryo-tomogram of native mouse corpus callosum #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50605:
native mouse liver solist tomogram #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50606:
native mouse liver solist tomogram #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50607:
SOLIST cryo-tomogram of human brain organoid #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50608:
SOLIST cryo-tomogram of human brain organoid #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50620:
S. cerevisiae ribosome from SOLIST lamellas
Method: subtomogram averaging / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50630:
mus musculus ribosome from SOLIST lamellas
Method: subtomogram averaging / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50646:
mus musculus heart thin filament from SOLIST lamellas
Method: subtomogram averaging / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50655:
mus musculus heart thin filament with myosin heads from SOLIST lamellas
Method: subtomogram averaging / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50580:
SOLIST cryo-tomogram of native left ventricle mouse heart muscle #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50582:
SOLIST native mouse heart muscle tomogram #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-18438:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18439:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18440:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18443:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 4
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18460:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-18461:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrk:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrl:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrm:
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qrn:
mt-SSU in GTPBP8 knock-out cells, state 4
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qu1:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

PDB-8qu5:
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
Method: single particle / : Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

EMDB-41994:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more