[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 24 items for (author: nazi & s)

EMDB-49119:
PROTAC-induced IRE1 ternary complex
Method: single particle / : Du J, Johnson M, Azumaya C, Rohou A, Hsu PL, Ashkenazi A

PDB-9n88:
PROTAC-induced IRE1 ternary complex
Method: single particle / : Du J, Johnson M, Azumaya C, Rohou A, Hsu PL, Ashkenazi A

EMDB-52956:
Structure of Cystathionine gamma-lyase with ZHAWOC24000
Method: single particle / : Uchikawa E, Nazi S, So A, Driss E

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-43119:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

PDB-8vbb:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

EMDB-19798:
human PLD3 homodimer structure
Method: single particle / : Lammens K

PDB-8s86:
human PLD3 homodimer structure
Method: single particle / : Lammens K

EMDB-34265:
CryoEM structure of human Pannexin isoform 3
Method: single particle / : Hussain N, Penmatsa A

EMDB-34266:
CryoEM structure of human Pannexin1 with R217H congenital mutation.
Method: single particle / : Hussain N, Penmatsa A

EMDB-34267:
Cryo-EM structure of human Pannexin1 resembling Pannexin2 pore with W74R/R75Dmutations
Method: single particle / : Hussain N, Penmatsa A

EMDB-34268:
human Pannexin1
Method: single particle / : Hussain N, Penmatsa A, Vinothkumar KR

PDB-8gtr:
CryoEM structure of human Pannexin isoform 3
Method: single particle / : Hussain N, Penmatsa A

PDB-8gts:
CryoEM structure of human Pannexin1 with R217H congenital mutation.
Method: single particle / : Hussain N, Penmatsa A

PDB-8gtt:
Cryo-EM structure of human Pannexin1 resembling Pannexin2 pore with W74R/R75Dmutations
Method: single particle / : Hussain N, Penmatsa A

EMDB-16010:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

EMDB-16030:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

PDB-8bev:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

PDB-8bgg:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

EMDB-23060:
The stress-sensing domain of activated IRE1a forms helical filaments in narrow ER membrane tubes
Method: subtomogram averaging / : Carter SD, Tran NH, De Maziere A, Ashkenazi A, Klumpermann J, Walter P, Jensen GJ

EMDB-23058:
The stress-sensing domain of activated IRE1a forms helical filaments in narrow ER membrane tubes
Method: subtomogram averaging / : Carter SD, Tran NH, De Maziere A, Ashkenazi A, Klumpermann J, Walter P, Jensen GJ

EMDB-11997:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

PDB-7b3y:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more