[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 182 items for (author: nair & d)

EMDB-47570:
DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Method: single particle / : Finney J, Harrison SC, Walsh Jr RM, Kelsoe G

EMDB-72116:
syNOS Asymmetric Locked State (Composite)
Method: single particle / : Nair D, Crane B

PDB-9q15:
syNOS Asymmetric Locked State (Composite)
Method: single particle / : Nair D, Crane B

EMDB-72088:
Symmetric Inactivated Locked State
Method: single particle / : Nair D, Xu Y, Crane B

PDB-9q06:
Symmetric Inactivated Locked State
Method: single particle / : Nair D, Xu Y, Crane B

EMDB-72087:
syNOS monomer bound to NADPH
Method: single particle / : Nair D, Crane B

PDB-9q05:
syNOS monomer bound to NADPH
Method: single particle / : Nair D, Crane B

EMDB-72104:
Focused refinement of syNOS Asymmetric Locked state- Region 1
Method: single particle / : Nair D, Crane B

EMDB-72105:
Focused refinement of syNOS Asymmetric Locked state- Region 2
Method: single particle / : Nair D, Crane B

EMDB-72110:
Asymmetric syNOS
Method: single particle / : Nair D, Crane BR

PDB-9q0y:
Asymmetric syNOS
Method: single particle / : Nair D, Crane BR

EMDB-72109:
syNOS Turnover State
Method: single particle / : Nair D, Crane B

PDB-9q0x:
syNOS Turnover State
Method: single particle / : Nair D, Crane B

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-45543:
Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45544:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45545:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45546:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-45548:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 prefusion spike
Method: single particle / : Casner RG, Shapiro L

PDB-9cfe:
Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cff:
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cfg:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Method: single particle / : Casner RG, Shapiro L

PDB-9cfh:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Method: single particle / : Casner RG, Shapiro L

EMDB-44915:
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44916:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

EMDB-44918:
Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44919:
Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)
Method: single particle / : Haile M, Anton L, Ho CM

EMDB-44920:
Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA
Method: single particle / : Haile M, Anton L, Ho CM

PDB-9bup:
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9buq:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9bus:
Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9but:
Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)
Method: single particle / : Anton L, Haile M, Ho CM

PDB-9buu:
Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNA
Method: single particle / : Anton L, Haile M, Ho CM

EMDB-49574:
Demo apoferritin data for Magellon
Method: single particle / : Stagg SM, Khoshbin B, Damodar P, Cianfrocco MA, Lander GC

EMDB-43237:
Structure of the BMAL1/HIF2A heterodimer in Complex with DNA
Method: single particle / : Li T, Tsai KL

PDB-8vhg:
Structure of the BMAL1/HIF2A heterodimer in Complex with DNA
Method: single particle / : Li T, Tsai KL

EMDB-42209:
Subtomogram averaged rotated-1 PRE back rolled state of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytes
Method: subtomogram averaging / : Anton L, Cheng W, Zhu X, Ho CM

EMDB-42210:
Subtomogram averaged eEF1alpha hibernating state of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytes
Method: subtomogram averaging / : Anton L, Cheng W, Zhu X, Ho CM

EMDB-42211:
Subtomogram averaged eEF2 hibernating-1 state of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytes
Method: subtomogram averaging / : Anton L, Cheng W, Zhu X, Ho CM

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl3:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl4:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl5:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more