[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 622 items for (author: mou & z)

EMDB-76165:
Nipah virus fusion protein with 20G7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76168:
Nipah virus fusion protein ectodomain in complex with 8C7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76170:
Hendra virus fusion protein ectodomain in complex with 9A9 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-55875:
HIV-1 capsid hexamers in presence of LEN
Method: subtomogram averaging / : Mourer T, Di Nunzio F, Harastani M, Gazi A, Sartori-Rupp A

EMDB-55876:
HIV-1 capsid hexamers in presence of LEN with C6 symmetry
Method: subtomogram averaging / : Mourer T, Di Nunzio F, Harastani M, Gazi A, Sartori-Rupp A

EMDB-55877:
HIV-1 capsid hexamers after 3 days post infection without Lenacapavir
Method: subtomogram averaging / : Mourer T, Di Nunzio F, Harastani M, Gazi A, Sartori-Rupp A

PDB-9nz0:
Cryo-EM structure of vaccine elicited antibody 22F5 bound to the post-fusion conformation of the LayV-F glycoprotein
Method: single particle / : Kumar U, May A, Acharya P

EMDB-65772:
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65773:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem docked at the AspRS active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65774:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem in an intermediate position toward the ATT active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-71135:
Structure of MAb PhtD3 in complex with PhtD
Method: single particle / : Du J, Cui J, Lin Z, Eisenhauer J, Weiner DB, Pallesen J

EMDB-48715:
Cryo-EM map of vaccine elicited antibody 22F5 bound to post-fusion conformation of Langya virus F protein
Method: single particle / : Kumar U, Acharya P

EMDB-49948:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

PDB-9nz2:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

EMDB-69467:
SARS-CoV-2 polymerase with incorporated and pre-incorporated AT-9052-Sp
Method: single particle / : Zhu YX, Shi H, Wang MF

PDB-24ew:
SARS-CoV-2 polymerase with incorporated and pre-incorporated AT-9052-Sp
Method: single particle / : Zhu YX, Shi H, Wang MF

EMDB-76684:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

EMDB-76685:
Pneumococcal choline binding CbpE surface protein bounds to multiple 5992-2 Fabs
Method: single particle / : McCormick A, Ghazi Esfahani B, Vida J, Lee FE, Tompkins M, McCaffrey K, Mousa J

PDB-12qj:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

EMDB-53844:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with weakly bound effector CCG28 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-53423:
Human vault protein - committed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

PDB-9qwq:
Human vault protein - committed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

EMDB-53415:
Human vault protein - primed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

EMDB-53438:
Human vault protein - local refinement of the waist - primed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

EMDB-53439:
Human vault protein - local refinement of the waist - committed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

EMDB-53440:
39-mer half of the human vault protein
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

PDB-9qw9:
Human vault protein - primed conformation
Method: single particle / : Lapenta F, Marechal N, Durand A, Aupic J, Cassetta A

EMDB-53375:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-63297:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63331:
Consensus map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63332:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63333:
Cryo-EM map of apo collagenase H from Hathewaya histolytica - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63334:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63335:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the C-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63336:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10 - focused map of ColH bound to the N-terminal region of collagen model peptide
Method: single particle / : Oki H, Kawahara K

EMDB-63337:
Composite map of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

EMDB-63339:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-63508:
Consensus map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-63509:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the ARM domain
Method: single particle / : Oki H, Kawahara K

EMDB-63510:
Cryo-EM map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12 - focused map of the Peptidase-Helper-PKD1 domains
Method: single particle / : Oki H, Kawahara K

EMDB-63511:
Composite map of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

EMDB-65889:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lqj:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lrk:
Cryo-EM structure of apo collagenase H from Hathewaya histolytica
Method: single particle / : Oki H, Kawahara K

PDB-9lrm:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Method: single particle / : Oki H, Kawahara K

PDB-9lyi:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Method: single particle / : Oki H, Kawahara K

PDB-9wdc:
Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of the collagen-binding protein ColH (Pro-Pro-Gly)10
Method: single particle / : Oki H, Kawahara K

EMDB-53346:
CryoEM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (focused refinement)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-47973:
The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

PDB-9efh:
The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more