[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,913 items for (author: michael & r)

EMDB-77750:
1D6 Fab/NA25:Ab complex
Method: single particle / : Du J, Pallesen J

EMDB-73556:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

EMDB-73630:
the structure of ERMA Mg2+ bound form
Method: single particle / : Shi N, Jiang Y

PDB-9ywq:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

PDB-9yyd:
the structure of ERMA Mg2+ bound form
Method: single particle / : Shi N, Jiang Y

EMDB-66671:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

PDB-9x9t:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

EMDB-75667:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Ke A, Terns M

EMDB-75685:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Chu X, Ke A, Terns M

EMDB-75686:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Chu X, Ke A, Terns M

PDB-11fs:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Ke A, Terns M

PDB-11hc:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Chu X, Ke A, Terns M

PDB-11hd:
Effector complex from type IV-C CRISPR-Cas system
Method: single particle / : Pittman C, Xu C, Catchpole R, Garrett S, Fuchs R, Makarova K, Koonin E, Zhao P, Wells L, Graveley B, Chu X, Ke A, Terns M

EMDB-75696:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75698:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75725:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75726:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

PDB-11hm:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11ho:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11is:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11it:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-71893:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-73816:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9pvm:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9z5i:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-72202:
CryoEM structure of beta2-adrenergic receptor dimer mediated by a biased allosteric modulator in lipid nanodisc
Method: single particle / : Shen J, Kobilka BK

PDB-9q3l:
CryoEM structure of beta2-adrenergic receptor dimer mediated by a biased allosteric modulator in lipid nanodisc
Method: single particle / : Shen J, Kobilka BK

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-56541:
RNA polymerase II bound to RPAP2 and Gdown1 (Map B)
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-56542:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

PDB-28jc:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-54113:
Human alpha3 Na+,K+-ATPase in the Na+-bound E1-ATP state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54114:
Human alpha3 Na+,K+-ATPase in the Na+-occluded E1P-ADP state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54115:
Human alpha3 Na+,K+-ATPase in the Na+-occluded E2P state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54116:
Human alpha3 Na+,K+-ATPase in the outward open E2P state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54117:
Human alpha3 Na+,K+-ATPase in the Na+-bound E1-ATP state obtained under turnover conditions
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54118:
Human alpha3 Na+,K+-ATPase in the Na+-occluded E1P-ADP state obtained under turnover conditions
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54119:
Human alpha3 Na+,K+-ATPase in the Na+-occluded E2P state obtained under turnover conditions
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54120:
Human alpha3 Na+,K+-ATPase in the K+-occluded E2P state obtained under turnover conditions
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54121:
Human alpha3 Q140L Na+,K+-ATPase in the Na+-bound E1 state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

EMDB-54122:
Human alpha3 Q140L Na+,K+-ATPase in the Na+-occluded E1P-ADP state
Method: single particle / : Christensen ME, Habeck M, Katz A, Fruergaard MU, Karlish SJD, Nissen P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more