[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 27,496 items for (author: mi & w)

EMDB-56368:
Escherichia coli ribosome arrested on a chimeric, 110-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56453:
Escherichia coli ribosome arrested on a chimeric, 130-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56462:
Escherichia coli ribosome arrested on a chimeric, 190-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-54985:
Subtomogram average of nucleosomes extracted from vitreous sections of Drosophila melanogaster embryos
Method: subtomogram averaging / : Fatmaoui F, Iusupova A, Grewe D, Taiki F, Leforestier A, Eltsov M

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo9:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-75660:
Capsid Subtomogram Average From NL4.3:PR(D25N) Immature HIV-1 Virions
Method: subtomogram averaging / : Preece B, Saffarian S

EMDB-43082:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

PDB-8v9t:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-63451:
Nonamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

PDB-9lwn:
Nonamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

EMDB-63416:
Octamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

PDB-9lv9:
Octamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

EMDB-63593:
Decamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

PDB-9m2x:
Decamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Method: single particle / : Chengdong H, Simin W, Xuan C

EMDB-72314:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

EMDB-56749:
GFP bound to distal DARPin (AHIR dodecamer scaffold system)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56784:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 11594 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56786:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56788:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 1500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56790:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 2500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56792:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 3500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56794:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 4500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56796:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 6500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56798:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 5500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56800:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 7500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56802:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 8500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56803:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 9500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56804:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 11500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56805:
GFP bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 10500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

PDB-28ql:
GFP bound to distal DARPin (AHIR dodecamer scaffold system)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-63769:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

EMDB-72305:
Pointed end of Cofilin-2 Bound F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72306:
Barbed End of Cofilin-2 F-actin, B0 and B-1 Unoccupied
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72307:
Barbed End of Cofilin-2 F-actin, B-1 Occupied
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72308:
Barbed End of Cofilin-2 F-actin, Terminal Actins Occupied with Cofilin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72313:
One CAP-1 Bound to the Pointed End of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72330:
Two CAP-1 Bound to the Pointed End of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72506:
One CAP-1 Bound to the Pointed End of Cofilin F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72703:
Two CAP-1 Bound to the Pointed End of Cofilin F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72707:
CP at the barbed end with one cofilin on second-to-last subunit
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72711:
Capping protein bound to the barbed end of cofilactin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-72712:
Cofilactin filament
Method: helical / : Palmer NJ, Dominguez R

EMDB-72998:
Capping protein bound to the barbed end of F-actin
Method: single particle / : Palmer NJ, Dominguez R

EMDB-52409:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52410:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides SA, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52411:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-53509:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more