[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 66 items for (author: masiulis & s)

EMDB-51384:
Structure of Sticholisin II in large unilamellar vesicles.
Method: single particle / : Santiago C, Martin-Benito J, Arranz R, Masiulis S

EMDB-51432:
Structure of fragacetoxin C in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C

PDB-9gj8:
Structure of Sticholisin II in large unilamellar vesicles.
Method: single particle / : Santiago C, Martin-Benito J, Arranz R, Masiulis S

PDB-9gkp:
Structure of fragacetoxin C in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C

EMDB-51426:
Structure of the octameric pore of Fragaceotxin C (FraC or DELTA-actitoxin-Afr1a) in large unilamellar vesicles.
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

EMDB-51431:
Structure of 6mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

PDB-9gkl:
Structure of the octameric pore of Fragaceotxin C (FraC or DELTA-actitoxin-Afr1a) in large unilamellar vesicles.
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

PDB-9gko:
Structure of 6mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

EMDB-51420:
Structure of 5mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D

PDB-9gki:
Structure of 5mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D

EMDB-18442:
Structure of active state MC4R in complex with a potent ligand mimicking nanobody
Method: single particle / : Busch A, Jaakola VP, Masiulis S

PDB-8qj2:
Structure of active state MC4R in complex with a potent ligand mimicking nanobody
Method: single particle / : Busch A, Jaakola VP, Masiulis S

EMDB-19666:
Cryo-electron tomogram of apoferritin
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19667:
Cryo-electron tomogram of keyhole limpet hemocyanin
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19668:
Cryo-electron tomogram of TGEV virions
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19669:
Cryo-electron tomogram of Influenza virions
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19670:
Cryo-electron tomogram of Magnetospirillum gryphiswaldense
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19671:
In situ cryo-electron tomogram of Saccharomyces cerevisiae
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19672:
Cryo-electron tomogram of keyhole limpet hemocyanin (stage position)
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19673:
Cryo-electron tomogram of keyhole limpet hemocyanin (3 um image shift)
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-19674:
Cryo-electron tomogram of keyhole limpet hemocyanin (6 um image shift)
Method: electron tomography / : Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

EMDB-14149:
CryoEM structure of mammalian AAP in complex with Meropenem
Method: single particle / : Kiss-Szeman AJ, Harmat V

PDB-7qun:
CryoEM structure of mammalian AAP in complex with Meropenem
Method: single particle / : Kiss-Szeman AJ, Harmat V, Straner P, Jakli I, Menyhard KD, Masiulis S, Perczel A

EMDB-14067:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14068:
Cryo-EM structure of human full-length beta3delta GABA(A)R in complex with nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14069:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with GABA, histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14070:
Cryo-EM structure of human full-length beta3delta GABA(A)R in complex with histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14071:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with GABA, histamine and nanobody Nb25 in a pre-open/closed state
Method: single particle / : Sente A, Desai R

EMDB-14072:
Cryo-EM structure of human full-length alpha4beta3gamma2 GABA(A)R in complex with GABA and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14073:
Cryo-EM structure of human full-length beta3gamma2 GABA(A)R in complex with GABA and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14074:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14075:
Cryo-EM structure of human full-length extrasynaptic beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R

EMDB-14076:
Cryo-EM structure of human full-length synaptic alpha1beta3gamma2 GABA(A)R in complex with Ro15-4513 and megabody Mb38
Method: single particle / : Sente A, Desai R

PDB-7qn5:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qn6:
Cryo-EM structure of human full-length beta3delta GABA(A)R in complex with nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qn7:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with GABA, histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qn8:
Cryo-EM structure of human full-length beta3delta GABA(A)R in complex with histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qn9:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with GABA, histamine and nanobody Nb25 in a pre-open/closed state
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qna:
Cryo-EM structure of human full-length alpha4beta3gamma2 GABA(A)R in complex with GABA and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qnb:
Cryo-EM structure of human full-length beta3gamma2 GABA(A)R in complex with GABA and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qnc:
Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qnd:
Cryo-EM structure of human full-length extrasynaptic beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

PDB-7qne:
Cryo-EM structure of human full-length synaptic alpha1beta3gamma2 GABA(A)R in complex with Ro15-4513 and megabody Mb38
Method: single particle / : Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR

EMDB-11610:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with megabody MbNbF3c7HopQ
Method: single particle / : Uchanski T, Masiulis S

EMDB-4542:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with histamine and megabody Mb25
Method: single particle / : Uchanski T, Masiulis S

PDB-6qfa:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with histamine and megabody Mb25
Method: single particle / : Uchanski T, Masiulis S, Fischer B, Kalichuk V, Wohlkoening A, Zoegg T, Remaut H, Vranken W, Aricescu AR, Pardon E, Steyaert J

EMDB-11657:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A

PDB-7a5v:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

EMDB-11638:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A
Method: single particle / : Nakane T, Kotecha A

PDB-7a4m:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more