[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 388 items for (author: masaru & m)

EMDB-75818:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

EMDB-75894:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

PDB-11lt:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

PDB-11ov:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

EMDB-71459:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71460:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71461:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71462:
Negative stain EM map of polyclonal serum from mouse immunized with H5 TX24-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71463:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71464:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71465:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71466:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71467:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71468:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71469:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71470:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71471:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71472:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71473:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-47713:
Integrin aIIbb3 bent conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

EMDB-47715:
Integrin aIIbb3 intermediate conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

EMDB-47716:
Integrin aIIbb3 dimer conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

PDB-9e8a:
Integrin aIIbb3 bent conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

PDB-9e8b:
Integrin aIIbb3 intermediate conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

PDB-9e8c:
Integrin aIIbb3 dimer conformation from human platelet membrane crude preparation
Method: single particle / : Han X, Nieman MT

EMDB-48093:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

EMDB-48101:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

EMDB-48102:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

EMDB-70264:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

PDB-9eit:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

PDB-9eje:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

PDB-9ejf:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

PDB-9o9v:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

EMDB-48078:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

PDB-9ei8:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-46824:
Polyclonal immune complex of human subject 321-2006 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46825:
Polyclonal immune complex of human subject 321-2009 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46827:
Polyclonal immune complex of human subject 321-2012 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46829:
Polyclonal immune complex of Fab from Cynomolgus Macaque 6974 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46830:
Polyclonal immune complex of Fab from Rhesus Macaque BB798E at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46831:
Polyclonal immune complex of Fab from Cynomolgus Macaque T009 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46832:
Polyclonal immune complex of Fab from Cynomolgus Macaque R996 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-45734:
Novel designed icosahedral nanoparticle I3-A6
Method: single particle / : Haas CM, Jasti N, Dosey AM, Gillespie R, Allen JD, Leaf EM, Crispin M, DeForest C, Kanekiyo M, King NP

EMDB-45735:
Novel designed icosahedral nanoparticle I3-A7
Method: single particle / : Haas CM, Jasti N, Dosey AM, Gillespie R, McGowan J, Allen JD, Leaf EM, Crispin M, DeForest C, Kanekiyo M, King NP

EMDB-45736:
Novel designed icosahedral nanoparticle I3-D12
Method: single particle / : Haas CM, Jasti N, Dosey AM, Gillespie R, McGowan J, Allen JD, Leaf EM, Crispin M, DeForest C, Kanekiyo M, King NP

PDB-9clz:
Novel designed icosahedral nanoparticle I3-A6
Method: single particle / : Haas CM, Jasti N, Dosey AM, Gillespie R, Allen JD, Leaf EM, Crispin M, DeForest C, Kanekiyo M, King NP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more