[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 228 items for (author: mansouri & k)

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-44740:
HIV Envelope trimer CH505 SOSIP.664 in complex with three CH103 E75K/D76N mutant antibody Fabs
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44644:
SARS CoV2 spike in complex with NTD-directed antibody Fab DH1052
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44736:
HIV Envelope trimer BG505 SOSIP.664 in complex with wild type CH103 antibody
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44738:
HIV Envelope BG505 SOSIP.664 in complex with one Fab of CH103 E75K/D76N mutant
Method: single particle / : Edwards RJ, Mansouri K

EMDB-44739:
HIV Envelope trimer CH505 SOSIP.664 in complex with wild type CH103 antibody
Method: single particle / : Edwards RJ, Mansouri K

EMDB-41810:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41820:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41823:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-41838:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to partially open HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env
Method: single particle / : Thakur B, Stalls VD, Acharya P

PDB-8u1d:
Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement
Method: single particle / : Thakur B, Stalls VD, Acharya P

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

PDB-8dtk:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-27624:
Cryo-EM structure of HIV-1 Env(CH848 10.17 DS.SOSIP_DT) in complex with DH1030.1 Fab
Method: single particle / : Gobeil S, Acharya P

EMDB-27628:
Cryo-EM structure of HIV-1 Env(BG505.T332N SOSIP) in complex with DH1030.1 Fab
Method: single particle / : Gobeil S, Acharya P

EMDB-28608:
Cryo-EM structure of CH848 10.17DT DS-SOSIP-2P Env
Method: single particle / : Wrapp D, Acharya P, Haynes BF

PDB-8eu8:
Cryo-EM structure of CH848 10.17DT DS-SOSIP-2P Env
Method: single particle / : Wrapp D, Acharya P, Haynes BF

EMDB-26676:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-26677:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-26678:
An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-27043:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody SP1-77 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

EMDB-27044:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody VHH7-7-53 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

EMDB-27046:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody VHH7-5-82 Fab in complex with SARS-CoV2 2P spike
Method: single particle / : Edwards RJ, Mansouri K

PDB-7upw:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

PDB-7upx:
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

PDB-7upy:
An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion
Method: single particle / : Zhang J, Luo S, Kreutzberger A, Kirchhausen T, Chen B, Haynes B, Alt F

EMDB-26961:
Triple mutant (K417N-E484K-N501Y) SARS-CoV-2 spike protein in the 3-RBD-Down conformation (S-GSAS-D614G-K417N-E484K-N501Y)
Method: single particle / : Gobeil S, Acharya P

EMDB-26600:
SARS-CoV-2 Omicron-BA.1 2-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.1)
Method: single particle / : Stalls V, Acharya P

EMDB-25880:
SARS-CoV-2 Omicron 1-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

PDB-7tge:
SARS-CoV-2 Omicron 1-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

EMDB-25983:
SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

EMDB-25984:
SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

PDB-7tl1:
SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

PDB-7tl9:
SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

EMDB-25846:
SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

EMDB-25865:
SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

EMDB-25904:
CryoEM map of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1042
Method: single particle / : Manne K, May A

PDB-7tei:
SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

PDB-7tf8:
SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Method: single particle / : Stalls V, Acharya P

PDB-7tht:
CryoEM structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1042
Method: single particle / : Manne K, May A, Acharya P

EMDB-25893:
Structure of RBD directed antibody DH1042 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interface
Method: single particle / : May AJ, Manne K, Acharya P

PDB-7the:
Structure of RBD directed antibody DH1042 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interface
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-26038:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; consensus state D1
Method: single particle / : Gobeil S, Acharya P

EMDB-26039:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; consensus state D2
Method: single particle / : Gobeil S, Acharya P

EMDB-26040:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D5 state
Method: single particle / : Gobeil S, Acharya P

EMDB-26041:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D6 state
Method: single particle / : Gobeil S, Acharya P

EMDB-26042:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D7 state
Method: single particle / : Gobeil S, Acharya P

EMDB-26043:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D8 state
Method: single particle / : Gobeil S, Acharya P

EMDB-26045:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D9 state
Method: single particle / : Gobeil S, Acharya P

EMDB-26046:
Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D10 state
Method: single particle / : Gobeil S, Acharya P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more